View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_11 (Length: 516)

Name: NF15081_low_11
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_11
NF15081_low_11
[»] chr5 (6 HSPs)
chr5 (18-284)||(40547371-40547637)
chr5 (288-478)||(40547679-40547869)
chr5 (480-509)||(26639035-26639064)
chr5 (481-509)||(18695279-18695307)
chr5 (473-509)||(23765411-23765447)
chr5 (473-509)||(23815259-23815295)
[»] chr7 (4 HSPs)
chr7 (473-509)||(42271609-42271645)
chr7 (471-509)||(20636895-20636933)
chr7 (480-509)||(27869194-27869223)
chr7 (480-508)||(8527072-8527100)
[»] scaffold0062 (2 HSPs)
scaffold0062 (472-509)||(49935-49972)
scaffold0062 (472-509)||(62474-62511)
[»] chr2 (2 HSPs)
chr2 (472-509)||(15701023-15701060)
chr2 (481-509)||(30714274-30714302)
[»] chr1 (2 HSPs)
chr1 (480-509)||(4059520-4059549)
chr1 (481-509)||(46432215-46432243)
[»] chr6 (1 HSPs)
chr6 (481-509)||(35102490-35102518)
[»] chr4 (1 HSPs)
chr4 (481-509)||(13826419-13826447)
[»] chr3 (2 HSPs)
chr3 (481-509)||(25179852-25179880)
chr3 (481-509)||(28173728-28173756)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 40547371 - 40547637
Alignment:
Q  18 gtatgatagtcagatcatgaatgtgaatatggcttatgatataagagggttggtataacattgtaattgtatgaaaagaaatttagttaaactaaacgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547371 gtatgatagtcagatcatgaatgtgaatatggcttatgatataagagggttggtataacattgtaattgtatgaaaagaaatttagttaaactaaacgat 40547470  T
Q  118 tactgtttgtattttcatttggtttaaattttgtatgctgtgaaggaaattcatttgtccatataacaatgttaatgctacttctctcaatacctttttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547471 tactgtttgtattttcatttggtttaaattttgtatgctgtgaaggaaattcatttgtccatataacaatgttaatgctacttctctcaatacctttttt 40547570  T
Q  218 gtctagttcctcattaaaggattttagtccaataaagaaaaataaacaattaatggagaatatcaat 284  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547571 gtttagttcctcattaaaggattttagtccaataaagaaaaataaacaattaatggagaatatcaat 40547637  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 288 - 478
Target Start/End: Original strand, 40547679 - 40547869
Alignment:
Q  288 aattgccttgatctccttacctcaacagacacaannnnnnnncatatatcaatcaattttgggcggcgaaagaatcatggatcaaactctttgttgttta 387  Q
    ||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547679 aattgccttgatctccttacctcaacaaacacaattttttt-catatatcaatcaattttgggcggcgaaagaatcatggatcaaactctttgttgttta 40547777  T
Q  388 gcagtctttcgttggacctcaaatcggaataggtatgaagggtgaaatattcttt-aaaaaatggcaaagactggtttagtttgattaaaaa 478  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40547778 gtggtctttcgttggacctcaaatcggaataggtatgaagggtgaaatattctttaaaaaaatggcaaagactggtttagtttgattaaaaa 40547869  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Original strand, 26639035 - 26639064
Alignment:
Q  480 aaggctaaagtgcacttttcgccccctatg 509  Q
    ||||||||||||||||||||||||||||||    
T  26639035 aaggctaaagtgcacttttcgccccctatg 26639064  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 18695307 - 18695279
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  18695307 aggctaaagtgcacttttcgccccctatg 18695279  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 23765411 - 23765447
Alignment:
Q  473 taaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  23765411 taaaaagtaggctaaactgcacttttcgccccctatg 23765447  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 23815259 - 23815295
Alignment:
Q  473 taaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  23815259 taaaaagtaggctaaactgcacttttcgccccctatg 23815295  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 42271645 - 42271609
Alignment:
Q  473 taaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||||||||||    
T  42271645 taaaaagaaggctaaagtgcacttttcgccccctatg 42271609  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 509
Target Start/End: Complemental strand, 20636933 - 20636895
Alignment:
Q  471 attaaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  20636933 attaaaataaaggctaaagtgcacttttcgccccctatg 20636895  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Original strand, 27869194 - 27869223
Alignment:
Q  480 aaggctaaagtgcacttttcgccccctatg 509  Q
    ||||||||||||||||||||||||||||||    
T  27869194 aaggctaaagtgcacttttcgccccctatg 27869223  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 508
Target Start/End: Complemental strand, 8527100 - 8527072
Alignment:
Q  480 aaggctaaagtgcacttttcgccccctat 508  Q
    |||||||||||||||||||||||||||||    
T  8527100 aaggctaaagtgcacttttcgccccctat 8527072  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 49972 - 49935
Alignment:
Q  472 ttaaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    |||||||  |||||||||||||||||||||||||||||    
T  49972 ttaaaaattaggctaaagtgcacttttcgccccctatg 49935  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 62511 - 62474
Alignment:
Q  472 ttaaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    |||||||  |||||||||||||||||||||||||||||    
T  62511 ttaaaaattaggctaaagtgcacttttcgccccctatg 62474  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 15701060 - 15701023
Alignment:
Q  472 ttaaaaagaaggctaaagtgcacttttcgccccctatg 509  Q
    |||||||  |||||||||||||||||||||||||||||    
T  15701060 ttaaaaattaggctaaagtgcacttttcgccccctatg 15701023  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 30714274 - 30714302
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  30714274 aggctaaagtgcacttttcgccccctatg 30714302  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Original strand, 4059520 - 4059549
Alignment:
Q  480 aaggctaaagtgcacttttcgccccctatg 509  Q
    ||||||||||||||||||||||||||||||    
T  4059520 aaggctaaagtgcacttttcgccccctatg 4059549  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 46432215 - 46432243
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  46432215 aggctaaagtgcacttttcgccccctatg 46432243  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 35102490 - 35102518
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  35102490 aggctaaagtgcacttttcgccccctatg 35102518  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 13826419 - 13826447
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  13826419 aggctaaagtgcacttttcgccccctatg 13826447  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 25179880 - 25179852
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  25179880 aggctaaagtgcacttttcgccccctatg 25179852  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 28173728 - 28173756
Alignment:
Q  481 aggctaaagtgcacttttcgccccctatg 509  Q
    |||||||||||||||||||||||||||||    
T  28173728 aggctaaagtgcacttttcgccccctatg 28173756  T

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