View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_12 (Length: 514)
Name: NF15081_low_12
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_12 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 155 - 468
Target Start/End: Original strand, 34965357 - 34965671
Alignment:
| Q |
155 |
gacacaacatactcttaatactgaacttctgtaaaa-aaggtttagagatagttggttaatgcttgtacatagaaatgctttatcattttgcttaaagac |
253 |
Q |
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| T |
34965357 |
gacacaacatactcttaatactgaacttctgtaaaaaaaggtttagagatagttggttaatgcttgtgcatagaaatgctttatcattttgcttaaagac |
34965456 |
T |
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| Q |
254 |
ttgaagaatatttatagacttagtttagtagtgtcttttcgaatcacatgagaggaataatattttttgaagaagcaaaattagtccatccaaaataata |
353 |
Q |
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| T |
34965457 |
ttgaagaatatttatagacttagtttagtagtgtctttttgaatcacatgagaggaataatattttttgaagaagcaaaattaatccatccaaaatgata |
34965556 |
T |
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| Q |
354 |
tcggaagaatcaaacttgagaccttgagaagaagcacgcttccaagttctaagttaataccatcagaacaacccaaatgagttcatctaaaaggaataat |
453 |
Q |
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| T |
34965557 |
tcggaagaatcaaatttgagaccttgagaagaagcacgctttcaaattctaagttaataccatcagaacaacccaagtgagttcatctaaaaggaataat |
34965656 |
T |
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| Q |
454 |
ataaattgatgccta |
468 |
Q |
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| T |
34965657 |
ataaattgatgccta |
34965671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 34965219 - 34965280
Alignment:
| Q |
18 |
actaaagaaagcgagagtacgcatgaaaatatttttctatatttattttaaggaatgaggac |
79 |
Q |
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| T |
34965219 |
actaaagaaagcgagagcacgcatgaaaatattttcctatatttattttaaggaatgaggac |
34965280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 24107427 - 24107352
Alignment:
| Q |
316 |
ttttttgaagaagcaaaattagtccatccaaaataatatcgga-agaatcaaacttgagaccttgagaagaagcac |
390 |
Q |
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| T |
24107427 |
ttttttgaagaagctaaattagtccatccaaaatagtactggagagaatccaatttgagatctcgagaaggagcac |
24107352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 16671 - 16601
Alignment:
| Q |
316 |
ttttttgaagaagcaaaattagtccatccaaaataatatcggaagaatcaaacttgagaccttgagaagaa |
386 |
Q |
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| T |
16671 |
ttttttgaagaagttaaattagcccactcaaattgatatagggagaatcaaacatgagaccttgagaagaa |
16601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 9187532 - 9187478
Alignment:
| Q |
320 |
ttgaagaagcaaaattagtccatccaaaataatatcggaagaatcaaacttgaga |
374 |
Q |
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| T |
9187532 |
ttgaagaagctaaattagtccactcaaattgacatcggaagaatcaaacttgaga |
9187478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 29564021 - 29563939
Alignment:
| Q |
316 |
ttttttgaagaagcaaaattagtccatccaaaataatatcgga-agaatcaaacttgagaccttgagaagaagcacgcttcca |
397 |
Q |
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| T |
29564021 |
ttttttgaagaagcaaaattagtccatcttaactaacatcagagagaatcgaacctgagacttcgaggagaagcacacttcca |
29563939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 33464583 - 33464513
Alignment:
| Q |
316 |
ttttttgaagaagcaaaattagtccatccaaaataatatcggaagaatcaaacttgagaccttgagaagaa |
386 |
Q |
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| T |
33464583 |
ttttttgaagaagttaaattagcccactcaaattgatatagggagaatcaaacatgagaccttgagaagaa |
33464513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 42465565 - 42465607
Alignment:
| Q |
395 |
ccaagttctaagttaataccatcagaacaacccaaatgagttc |
437 |
Q |
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| T |
42465565 |
ccaagttccaagctaataccatcagaccaacccaaatgagttc |
42465607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 387
Target Start/End: Complemental strand, 25838290 - 25838262
Alignment:
| Q |
359 |
agaatcaaacttgagaccttgagaagaag |
387 |
Q |
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| T |
25838290 |
agaatcaaacttgagaccttgagaagaag |
25838262 |
T |
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