View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_19 (Length: 445)

Name: NF15081_low_19
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_19
NF15081_low_19
[»] chr5 (10 HSPs)
chr5 (195-431)||(33799178-33799426)
chr5 (195-419)||(33728071-33728307)
chr5 (6-72)||(2411913-2411979)
chr5 (6-73)||(34307344-34307411)
chr5 (6-71)||(26719106-26719171)
chr5 (6-71)||(26988850-26988915)
chr5 (6-74)||(2024850-2024918)
chr5 (288-367)||(6141372-6141452)
chr5 (6-73)||(40794535-40794602)
chr5 (31-73)||(15639277-15639319)
[»] chr7 (6 HSPs)
chr7 (18-74)||(23858896-23858952)
chr7 (6-73)||(23020694-23020761)
chr7 (6-69)||(27237635-27237698)
chr7 (12-73)||(26917900-26917961)
chr7 (31-69)||(20153030-20153068)
chr7 (12-69)||(12419715-12419772)
[»] chr4 (7 HSPs)
chr4 (12-72)||(52468115-52468175)
chr4 (6-74)||(39329616-39329684)
chr4 (6-72)||(36118669-36118735)
chr4 (6-73)||(40217056-40217125)
chr4 (1-74)||(27111858-27111931)
chr4 (6-73)||(37746932-37746999)
chr4 (31-73)||(24396765-24396807)
[»] scaffold0007 (1 HSPs)
scaffold0007 (6-71)||(231072-231137)
[»] chr2 (8 HSPs)
chr2 (6-74)||(21665913-21665981)
chr2 (6-72)||(11952819-11952885)
chr2 (6-73)||(16227581-16227648)
chr2 (6-73)||(37622534-37622601)
chr2 (31-74)||(29694205-29694248)
chr2 (36-74)||(38400619-38400657)
chr2 (37-73)||(11912989-11913025)
chr2 (33-73)||(37182490-37182530)
[»] chr1 (3 HSPs)
chr1 (6-74)||(10926156-10926224)
chr1 (6-72)||(26803784-26803850)
chr1 (6-66)||(39134935-39134995)
[»] chr3 (2 HSPs)
chr3 (7-74)||(26279365-26279432)
chr3 (6-74)||(52374489-52374557)
[»] chr8 (4 HSPs)
chr8 (6-72)||(34048920-34048986)
chr8 (6-74)||(15167626-15167694)
chr8 (6-74)||(15078582-15078650)
chr8 (137-189)||(38009490-38009542)
[»] chr6 (1 HSPs)
chr6 (1-74)||(2477791-2477864)
[»] scaffold1320 (1 HSPs)
scaffold1320 (6-74)||(1178-1246)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 195 - 431
Target Start/End: Complemental strand, 33799426 - 33799178
Alignment:
Q  195 ataatgtttatctacctattaggtttttaattattatatatgaaattactagactgcaat-actg----------atacctacatctggttattttctat 283  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| |||  ||||          |||||||  |||| |||||||||||    
T  33799426 ataatatttatctacctattaggcttttagttattatatatgaacttactagactccaaagactgcaatatttttatacctatctctgattattttctat 33799327  T
Q  284 ctgcattgtttcaactttgtcatcattctttgcctaataattatttatttggtttgtttttagcatcaacaaatgtagtcatgtccaatggtttatagag 383  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||     
T  33799326 ctgcattgtttcaactctgtcatcattctttgcccaataattatttatttgggttgtgtttaacatcaacaaatgtagtcatgtccaatggtttatggaa 33799227  T
Q  384 tgtaaagtgcgatgaaataggtttac-ttgtagtttgtatagatatatg 431  Q
    | ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  33799226 tctaaagtgcgatgaaatatgtttacgttgtagtttgtatagatatatg 33799178  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 195 - 419
Target Start/End: Complemental strand, 33728307 - 33728071
Alignment:
Q  195 ataatgtttatctacctattaggtttttaattattatatatgaaattactagactgcaat-actg----------atacctacatctggttattttctat 283  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| |||  ||||          |||||||  |||| |||||||||||    
T  33728307 ataatatttatctacctattaggcttttagttattatatatgaacttactagactccaaagactgcaatatttttatacctatctctgattattttctat 33728208  T
Q  284 ctgcattgtttcaactttgtcatcattctttgcctaataattatttatttggtttgtttttagcatcaacaaatgtagtcatgtccaatggtttatagag 383  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||     
T  33728207 ctgcattgtttcaactctgtcatcattctttgcccaataattatttatttgggttgtgtttaacatcaacaaatgtagtcatgtccaatggtttatggaa 33728108  T
Q  384 tgtaaagtgcgatgaaataggtttac-ttgtagtttg 419  Q
    | ||||||||||||||||| |||||| ||||||||||    
T  33728107 tctaaagtgcgatgaaatatgtttacgttgtagtttg 33728071  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 2411979 - 2411913
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataa 72  Q
    ||||| ||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||    
T  2411979 agaagaaaaggaaagtctgatggagtgatggtgatggaacacgtggtatcaaagagaaagagaataa 2411913  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 34307344 - 34307411
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||| ||||||||||| | || | |||||||||||||||| ||||||||||||||||||||||||||    
T  34307344 agaagaaaaggaaagtccgatggagtgatggtgatggaacatgtggtatcagagagaaagagaataag 34307411  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 26719106 - 26719171
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaata 71  Q
    ||||| ||||||||||  | |||| ||||||||||||||| |||||||||||||||||||||||||    
T  26719106 agaagaaaaggaaagttcgatgcagtgatggtgatggaacgcgtggtatcagagagaaagagaata 26719171  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 26988850 - 26988915
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaata 71  Q
    ||||| ||||||||||  | |||| ||||||||||||||| |||||||||||||||||||||||||    
T  26988850 agaagaaaaggaaagttcgatgcagtgatggtgatggaacgcgtggtatcagagagaaagagaata 26988915  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 2024850 - 2024918
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||||||||||| | || | ||||||||||||||| || |||||||||||||||||||||||||    
T  2024850 agaagaaaaggaaagtcagatggagtgatggtgatggaacgcgcggtatcagagagaaagagaataagg 2024918  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 6141372 - 6141452
Alignment:
Q  288 attgtttcaactttgtcatcattctttgcctaataatt-atttatttggtttgtttttagcatcaacaaatgtagtcatgt 367  Q
    |||| ||||| | ||||||||| ||||||| ||||||| ||||| |||| |||| ||||||| ||||||||||||||||||    
T  6141372 attgcttcaaatctgtcatcatcctttgcccaataatttatttagttggcttgtgtttagcagcaacaaatgtagtcatgt 6141452  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 40794535 - 40794602
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||| |||||||||| || || | ||||||| ||||||| |||||||||| ||||||||||||||||    
T  40794535 agaagaaaaggaaagtttgatggaatgatggtaatggaacgcgtggtatcaaagagaaagagaataag 40794602  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 15639319 - 15639277
Alignment:
Q  31 tgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  15639319 tgatggtgatggaacgtgtggtatcagagagaaagagaataag 15639277  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 23858952 - 23858896
Alignment:
Q  18 aagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  23858952 aagtctgatgcagtgatggtgatggaacgcgtggtatcagagagaaagagaataagg 23858896  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 23020694 - 23020761
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||| ||||||||||| | || | ||||||||||||||| |||||||||||||||||||||||||||    
T  23020694 agaagaaaaggaaagtccgatggaatgatggtgatggaacgcgtggtatcagagagaaagagaataag 23020761  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 27237635 - 27237698
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaa 69  Q
    ||||| ||||||||||| | || | ||||||||||||||| |||||||||||||||| ||||||    
T  27237635 agaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtggtatcagagagatagagaa 27237698  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 26917900 - 26917961
Alignment:
Q  12 aaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    |||| |||||||| || | ||||||||||| ||||| |||||||||| ||||||||||||||    
T  26917900 aaagtaaagtctgatggagtgatggtgatgaaacacatggtatcagatagaaagagaataag 26917961  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 20153068 - 20153030
Alignment:
Q  31 tgatggtgatggaacacgtggtatcagagagaaagagaa 69  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  20153068 tgatggtgatggaacgtgtggtatcagagagaaagagaa 20153030  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 12419715 - 12419772
Alignment:
Q  12 aaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaa 69  Q
    ||||||||||| | || | ||||||||||||||| | |||||||||||||||| ||||    
T  12419715 aaaggaaagtccgatggagtgatggtgatggaacgcatggtatcagagagaaaaagaa 12419772  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 52468175 - 52468115
Alignment:
Q  12 aaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataa 72  Q
    ||||||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||    
T  52468175 aaaggaaagtctgatggagtgatggtgatggaacgcgtggtatcagagagaaagagaataa 52468115  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 39329616 - 39329684
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||||||||||||| |  | ||||| |||| |||| ||||||||||||||||||||||||||||    
T  39329616 agaagaaaaggaaagtctgattgagtgatgatgatagaacgcgtggtatcagagagaaagagaataagg 39329684  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 36118669 - 36118735
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataa 72  Q
    ||||| ||||||||||| | || | ||||||| ||||||  ||||||||||||||||||||||||||    
T  36118669 agaagaaaaggaaagtccgatggagtgatggtaatggaaagcgtggtatcagagagaaagagaataa 36118735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 40217125 - 40217056
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacac--gtggtatcagagagaaagagaataag 73  Q
    ||||| ||||||||||||| || | |||||||||||||||||  ||| ||| ||||||||||||||||||    
T  40217125 agaagaaaaggaaagtctgatggagtgatggtgatggaacacatgtgatattagagagaaagagaataag 40217056  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27111931 - 27111858
Alignment:
Q  1 agaggagaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    |||| ||||| |||||||||||||  | | ||||||||| ||||  |||||||||||||| |||||||||||||    
T  27111931 agagaagaagaaaaggaaagtctgacggagtgatggtgaaggaaagcgtggtatcagagataaagagaataagg 27111858  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 37746932 - 37746999
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||| ||||||||||| | || | |||||||||||| |  |||||||||||||||||||| ||||||    
T  37746932 agaagaaaaggaaagtccgatggagtgatggtgatggtatgcgtggtatcagagagaaagataataag 37746999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 24396807 - 24396765
Alignment:
Q  31 tgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||||||||||||| | | |||||||||||||||||||||||    
T  24396807 tgatggtgatggaacgcttagtatcagagagaaagagaataag 24396765  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 231072 - 231137
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaata 71  Q
    ||||| ||||||||||||| || | ||||| ||||||||||| |||||||||||||||||||||||    
T  231072 agaagaaaaggaaagtctgatggagtgatgttgatggaacacatggtatcagagagaaagagaata 231137  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 21665913 - 21665981
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||||||||||||| || | ||||| ||||||||| |||||||||| |||||||||||||||||    
T  21665913 agaagaaaaggaaagtctgatggagtgatgatgatggaacgcgtggtatcaaagagaaagagaataagg 21665981  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 11952819 - 11952885
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataa 72  Q
    ||||| ||||||||| | |||| | ||||||||||||||| ||||||| ||||||||||||||||||    
T  11952819 agaagaaaaggaaagcccggtggagtgatggtgatggaacgcgtggtaccagagagaaagagaataa 11952885  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 16227581 - 16227648
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||| ||||||||| | | || | ||||||||||| ||| |||||||||||||||||||||||||||    
T  16227581 agaagaaaaggaaaggccgatggagtgatggtgatgaaacgcgtggtatcagagagaaagagaataag 16227648  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 37622534 - 37622601
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||| ||||||||||||| || | ||||| ||||||||| |||||||| ||||||||||| ||||||    
T  37622534 agaagaaaaggaaagtctgatggagtgatgatgatggaacgcgtggtatgagagagaaagataataag 37622601  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 29694248 - 29694205
Alignment:
Q  31 tgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||    
T  29694248 tgatggtgatggaacgcgtggtatcagatagaaggagaataagg 29694205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 38400657 - 38400619
Alignment:
Q  36 gtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  38400657 gtgatggaacatgtggtatcagaaagaaagagaataagg 38400619  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 11912989 - 11913025
Alignment:
Q  37 tgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||||||  |||||||||||||||||||||||||||    
T  11912989 tgatggaatgcgtggtatcagagagaaagagaataag 11913025  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 37182530 - 37182490
Alignment:
Q  33 atggtgatggaacacgtggtatcagagagaaagagaataag 73  Q
    ||||||||| |||  ||||||||||||||||||||||||||    
T  37182530 atggtgatgtaacgtgtggtatcagagagaaagagaataag 37182490  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 10926156 - 10926224
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||||||||||||| || | ||||||||||||||| | ||||| ||||||||||||||||||||    
T  10926156 agaagaaaaggaaagtctgatggagtgatggtgatggaacgcatggtaccagagagaaagagaataagg 10926224  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 26803850 - 26803784
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataa 72  Q
    ||||| |||| |||||||| || | |||||||||||||||||| ||||| |||||||||||||||||    
T  26803850 agaagaaaagaaaagtctgatggagtgatggtgatggaacacgcggtattagagagaaagagaataa 26803784  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 39134935 - 39134995
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaaga 66  Q
    ||||| |||||||| |||| || | ||||||||||||||| | ||||||||||||||||||    
T  39134935 agaagaaaaggaaaatctgatggagtgatggtgatggaacgcatggtatcagagagaaaga 39134995  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 26279432 - 26279365
Alignment:
Q  7 gaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    |||| |||||||||| || || | |||||||||||||||  |||||||||||||||||||||||||||    
T  26279432 gaagaaaaggaaagtttgttggagtgatggtgatggaacgtgtggtatcagagagaaagagaataagg 26279365  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 52374557 - 52374489
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||||||||||||| |  | ||||||||||||||| |||||||||||| |||| | ||||||||    
T  52374557 agaagaaaaggaaagtctgataaagtgatggtgatggaacgcgtggtatcagaaagaaggcgaataagg 52374489  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 34048920 - 34048986
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataa 72  Q
    ||||| ||||||||||| | || | ||||||||||||||| ||||||||| ||||||||||||||||    
T  34048920 agaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtggtatcggagagaaagagaataa 34048986  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 15167626 - 15167694
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||||||||||||| |  | ||||||||||||||| |||||||||||||||||| | |||||||    
T  15167626 agaagaaaaggaaagtctgatagagtgatggtgatggaacgcgtggtatcagagagaaaaataataagg 15167694  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 15078650 - 15078582
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||| ||||||||| |  | ||||||||||||||| |||||||||||||||||| | |||||||    
T  15078650 agaagaaaatgaaagtctgatagagtgatggtgatggaacgcgtggtatcagagagaaaaataataagg 15078582  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 38009490 - 38009542
Alignment:
Q  137 cataccttgtggaggcccggctccattgaactctatacacaccccaagatccg 189  Q
    ||||||||| |||||| | |||||||||| |||| ||||||||||||| ||||    
T  38009490 cataccttggggaggctcagctccattgagctctttacacaccccaaggtccg 38009542  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2477791 - 2477864
Alignment:
Q  1 agaggagaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    |||| ||||| |||||||||||||  | | ||||||||| ||||  |||||||||||||| |||||||||||||    
T  2477791 agagaagaagaaaaggaaagtctgacggagtgatggtgaaggaaagcgtggtatcagagataaagagaataagg 2477864  T

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Target: scaffold1320 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 1246 - 1178
Alignment:
Q  6 agaagcaaaggaaagtctggtgcactgatggtgatggaacacgtggtatcagagagaaagagaataagg 74  Q
    ||||| ||| ||||||||| |  | ||||||||||||||| |||||||||||||||||| | |||||||    
T  1246 agaagaaaatgaaagtctgatagagtgatggtgatggaacgcgtggtatcagagagaaaaataataagg 1178  T

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