View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_2 (Length: 663)

Name: NF15081_low_2
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_2
NF15081_low_2
[»] chr6 (11 HSPs)
chr6 (7-644)||(34770856-34771493)
chr6 (7-170)||(34781205-34781365)
chr6 (455-561)||(34795615-34795721)
chr6 (455-561)||(34780767-34780873)
chr6 (7-74)||(11549489-11549556)
chr6 (562-616)||(34780904-34780958)
chr6 (562-616)||(34795752-34795806)
chr6 (206-274)||(34795285-34795353)
chr6 (208-274)||(34780505-34780570)
chr6 (290-384)||(34795418-34795512)
chr6 (117-164)||(34777675-34777720)


Alignment Details
Target: chr6 (Bit Score: 622; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 644
Target Start/End: Original strand, 34770856 - 34771493
Alignment:
Q  7 gagagaagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagaga 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770856 gagaaaagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagaga 34770955  T
Q  107 tgatagtatatgatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatcta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770956 tgatagtatatgatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatcta 34771055  T
Q  207 taataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771056 taataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagag 34771155  T
Q  307 tctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaactcctttaggccaaataagtagcattggctatttctttttaataaagta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34771156 tctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagta 34771255  T
Q  407 gcattcattcattatttatttacttttgtttctctaataccattagaaaatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  34771256 gcattcattcattatttatttacttttgtttctctaataccattagaaaatgaaagaaagagaatctcgcttcctacttctctctagttttcgtgtctct 34771355  T
Q  507 aattgatctttaccacaacaaaaccaagccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctct 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771356 aattgatctttaccacaacaaaaccaagccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctct 34771455  T
Q  607 ttttcttactgttacttccctctctatattgttacttc 644  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34771456 ttttcttactgttacttccctctctatattgttacttc 34771493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 34781205 - 34781365
Alignment:
Q  7 gagagaagaacacactactttttcaaataaaa-gatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagag 105  Q
    |||| ||| ||||||||||| ||||||||||| ||| || |||||||||||||||  ||||||||||||||||||  |  |||| |||||||||||||||    
T  34781205 gagaaaaggacacactacttgttcaaataaaaagattagagataaaatagtaattttaaaattaagatgtttcat--ggaggaaagaaaaataataagag 34781302  T
Q  106 atgatagtatatgatggaatgcattctactatataatccattttattccattcaatttttacaaa 170  Q
    ||||| ||||| |||| |||||||| || ||||  ||||||||||||||||||||||||||||||    
T  34781303 atgatggtatacgatgaaatgcattatattata--atccattttattccattcaatttttacaaa 34781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 455 - 561
Target Start/End: Original strand, 34795615 - 34795721
Alignment:
Q  455 aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca 554  Q
    ||||||||| |||||||||| |||||||||||  ||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34795615 aatgaaagaaagagaatctcacttcctacttccctctagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca 34795714  T
Q  555 tgtcacc 561  Q
    |||||||    
T  34795715 tgtcacc 34795721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 455 - 561
Target Start/End: Original strand, 34780767 - 34780873
Alignment:
Q  455 aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca 554  Q
    ||||||||| |||||||||| |||||||||||  | ||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34780767 aatgaaagaaagagaatctcacttcctacttccctttagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca 34780866  T
Q  555 tgtcacc 561  Q
    |||||||    
T  34780867 tgtcacc 34780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 11549489 - 11549556
Alignment:
Q  7 gagagaagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg 74  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11549489 gagaaaaggacacactactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg 11549556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 562 - 616
Target Start/End: Original strand, 34780904 - 34780958
Alignment:
Q  562 atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact 616  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34780904 atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact 34780958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 562 - 616
Target Start/End: Original strand, 34795752 - 34795806
Alignment:
Q  562 atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact 616  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34795752 atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact 34795806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
Q  206 ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 274  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  34795285 ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact 34795353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
Q  208 aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 274  Q
    |||||||| ||||||||||  || ||||||| || ||||||||||||||||||||||||||||||||    
T  34780505 aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact 34780570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
Q  290 aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaactcctttaggccaaataagtagcattg 384  Q
    ||||| ||||||||||| ||   | ||| |||||| || ||||||||||||||||||| |||| ||||||  |||  ||||||||||||||||||    
T  34795418 aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg 34795512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 34777675 - 34777720
Alignment:
Q  117 tgatggaatgcattctactatataatccattttattccattcaatttt 164  Q
    ||||||||| |||||||||||   ||||||||||||||||||||||||    
T  34777675 tgatggaatccattctactatc--atccattttattccattcaatttt 34777720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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