View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15081_low_22 (Length: 410)
Name: NF15081_low_22
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 16154842 - 16155218
Alignment:
| Q |
18 |
ccaccattatcacatagttgttaaattataaatgataaatctctaannnnnnnncatttaaattttgtttgagcatagggcaattaatacaggtagaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
16154842 |
ccaccattatcacatagttgttaaattataaatgataaatctctaattttttt-cattcaaattttgtacgagcacagggcaattaatacaggtagaagg |
16154940 |
T |
|
| Q |
118 |
tgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16154941 |
tgaatgcacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttca |
16155040 |
T |
|
| Q |
218 |
ttctacaacttatgcacttgtagttatgatcagccaccaccagcatt---atcaccaactggtcattgtgatattgggatgggaatttgcactgatgact |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16155041 |
ttctacaacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtgatattgggatgggaatttgcactgatgact |
16155140 |
T |
|
| Q |
315 |
gtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16155141 |
gtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttc |
16155218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 16176562 - 16176917
Alignment:
| Q |
18 |
ccaccattatcacatagttgttaaattataaatgataaatctctaannnnnnnncatttaaattttgtttgagcatagggcaattaatacaggtagaagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
16176562 |
ccaccattatcacatagttgttaaattttaaatgataaatctctaaaaaaaattcatttaaattttgtacgagcacagggcaattaatacaggtagaagg |
16176661 |
T |
|
| Q |
118 |
tgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttca |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
16176662 |
tgaatgcacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcatcatgttca |
16176761 |
T |
|
| Q |
218 |
ttctacaacttatgcacttgtagttatgatcagccaccaccagcattatcaccaactggtcattgtgatattgggatgggaatttgcactgatgactgtc |
317 |
Q |
| |
|
| |||||||||||||||||||| || |||| |||||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
16176762 |
tactacaacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtc |
16176861 |
T |
|
| Q |
318 |
taagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggg |
373 |
Q |
| |
|
| ||| ||||||||||||| |||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
16176862 |
aagatgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctggg |
16176917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 16146210 - 16146564
Alignment:
| Q |
18 |
ccaccattatcacatagttgttaaattataaatgataaatctctaannnnnnnncatttaaattttgtttgagcatagggcaattaatacaggtagaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16146210 |
ccaccattatcacatagttgttaaattataaatgataaatctctaaaaaattt-catttaaattttgtttgagcatagggcaattaatacaggtagaagg |
16146308 |
T |
|
| Q |
118 |
tgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttca |
217 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | ||||||| | || ||| | | | || || ||| ||| |||||||||||| ||||||||| |
|
|
| T |
16146309 |
tgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttaggatcgtcatgttca |
16146408 |
T |
|
| Q |
218 |
ttctacaacttatgcacttgtagttatgatcagccaccaccagcattatcaccaactggtcattgtgatattgggatgggaatttgcactgatgactgtc |
317 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
16146409 |
ttctataacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtattgggatgggaatttgcactggtgactgtc |
16146508 |
T |
|
| Q |
318 |
taagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggg |
373 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
16146509 |
aagatgattgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttggg |
16146564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 16271101 - 16271217
Alignment:
| Q |
118 |
tgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttca |
217 |
Q |
| |
|
||||||||||| |||| | ||||| |||| |||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
16271101 |
tgaatgcacaaaaattataggtagatgtgataaagcaaattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcttcatgttca |
16271200 |
T |
|
| Q |
218 |
ttctacaacttatgcac |
234 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16271201 |
ttctacaacttatgcac |
16271217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 16289203 - 16289325
Alignment:
| Q |
116 |
ggtgaatgcacaataattgttggtagttgtgcaaaagtagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgtt |
215 |
Q |
| |
|
||||||||||||| |||||| ||||| |||| || || |||||||| |||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
16289203 |
ggtgaatgcacaaaaattgtgggtagatgtgatgaaataaattgtgcagttcattgtcaatcatatgcaaaagatgttgctgttttaggatcatcatgtt |
16289302 |
T |
|
| Q |
216 |
cattctacaacttatgcacttgt |
238 |
Q |
| |
|
|||||||| ||||||||| |||| |
|
|
| T |
16289303 |
cattctacgacttatgcatttgt |
16289325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University