View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_26 (Length: 350)
Name: NF15081_low_26
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 679251 - 679589
Alignment:
| Q |
1 |
tacgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggcatataactatatttcaaactcactataagttttagaaagcta |
99 |
Q |
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| T |
679251 |
tacgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggcatataactacatttcaaactcactataagttttagaaagcta |
679350 |
T |
|
| Q |
100 |
aatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679351 |
aatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcg |
679450 |
T |
|
| Q |
200 |
ctgattttagaactgcagggtttggagaattgaaataatgtgggatgacctctattcttgtccaataatcatcccccaaagtattaacacaatcctcttt |
299 |
Q |
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| T |
679451 |
ctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctcttt |
679550 |
T |
|
| Q |
300 |
ttctgaagaaacaacaacaaccttatctttatcagtgaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
679551 |
ttctgaagaaacaacaacaaccttatctttatcaatgaa |
679589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 751058 - 751290
Alignment:
| Q |
1 |
tacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaa |
100 |
Q |
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| T |
751058 |
tacgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcatagaactatatttcaaactcactataagttttagaaagctaa |
751155 |
T |
|
| Q |
101 |
atgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751156 |
atgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgc |
751255 |
T |
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| Q |
201 |
tgattttagaactgcagggtttggagaattgaaat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
751256 |
tgattttagaactgcagggtttggagaattgaaat |
751290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 747402 - 747507
Alignment:
| Q |
233 |
aataatgtgggatgacctctattcttgtccaataatcatcccccaaagtattaacacaatcctctttttctgaagaaacaacaacaaccttatctttatc |
332 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| ||||||| ||||| |
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| T |
747402 |
aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatc |
747501 |
T |
|
| Q |
333 |
agtgaa |
338 |
Q |
| |
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| |||| |
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|
| T |
747502 |
aatgaa |
747507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 2632659 - 2632504
Alignment:
| Q |
73 |
aaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaa |
172 |
Q |
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||||||||||||||||| | |||||||||| | ||||| || | ||||||||||||| ||||| |||||||||| ||||| | |||| |||||||| |
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| T |
2632659 |
aaactcactataagtttcaaaaagctaaatat---gaattattcacacacatgtgaagtgtatga--ctatgataatacaaagaacgagtggtgaaagaa |
2632565 |
T |
|
| Q |
173 |
t----ctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaa |
233 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
2632564 |
aagacctgatcttcacaaaacaa----tgtgctgattttaaaactgcagggtttggagaattgaa |
2632504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 7324687 - 7324736
Alignment:
| Q |
240 |
tgggatgacctctattcttgtccaataatcatcccccaaagtattaacac |
289 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7324687 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacac |
7324736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 9594898 - 9594949
Alignment:
| Q |
237 |
atgtgggatgacctctattcttgtccaataatcatcccccaaagtattaaca |
288 |
Q |
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| T |
9594898 |
atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaaca |
9594949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 9566094 - 9566143
Alignment:
| Q |
240 |
tgggatgacctctattcttgtccaataatcatcccccaaagtattaacac |
289 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
9566094 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacac |
9566143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 2476426 - 2476377
Alignment:
| Q |
240 |
tgggatgacctctattcttgtccaataatcatcccccaaagtattaacac |
289 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
2476426 |
tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacac |
2476377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 2491871 - 2491786
Alignment:
| Q |
240 |
tgggatgacctctattcttgtccaataatcatcccccaaagtattaacacaatcctctttttctgaagaaacaacaacaaccttat |
325 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||||| ||||| | | || ||||| ||||||||| ||| ||||||| |
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| T |
2491871 |
tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttat |
2491786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 754888 - 754952
Alignment:
| Q |
248 |
cctctattcttgtccaataatcatcccccaaagtattaacacaatcctctttttctgaagaaaca |
312 |
Q |
| |
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||||||||||||||||||||||| |||||| |||| ||||||| | || |||| || ||||||| |
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| T |
754888 |
cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaaca |
754952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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