View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_27 (Length: 345)
Name: NF15081_low_27
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 80 - 324
Target Start/End: Complemental strand, 46353330 - 46353086
Alignment:
| Q |
80 |
gtgcatctcttttatgtgatttgtatgaatttggccactaagcagacataagaaacacgacaaagagaatagtaatttgactgattttgaagttttcaga |
179 |
Q |
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| T |
46353330 |
gtgcatctcttttatgtgatttgtatgaatttggccactaagcagacataagaaacatgacaaagagaatagtaatttgactgattttgaagttttcaga |
46353231 |
T |
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| Q |
180 |
tttcatcattatattgcttccnnnnnnngttttgttttttactttaccgtgaaaagttaattagtatgcattggaattaagccaaatggctattgaaata |
279 |
Q |
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| T |
46353230 |
tttcatcattatattgcttccaaaaaaagttttgttttttactttaccgtgaaaagttaattagtatgcattagaattaagccaaatggctattgaaata |
46353131 |
T |
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| Q |
280 |
tcaacaatagtatcttaatgatttggttatgttaagaaatgactc |
324 |
Q |
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| T |
46353130 |
tcaacaatagtatcttaatgatttggttatgttaagaaatgactc |
46353086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46353409 - 46353377
Alignment:
| Q |
1 |
ttttgtacttgctatccaatattgatcgagacc |
33 |
Q |
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| T |
46353409 |
ttttgtacttgctatccaatattgatcgagacc |
46353377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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