View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15081_low_28 (Length: 340)
Name: NF15081_low_28
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_28 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 11240224 - 11239904
Alignment:
| Q |
12 |
atgaaggcagaaacgtggtcgagaaagaatttaagcaacaaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatc |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11240224 |
atgaaggcagaaacagggtcgagaaagaatttgagcaacaaaaaattcatcactttggctgtgttttatacaactttgtcgaaaaatgaaaaagaatatc |
11240125 |
T |
|
| Q |
112 |
atgggtaatttgggaaagtacatcagccaccaaaagttgaattcctaaattgcttttgaaaagctccaacttttagcttatggtagacgtgagtttg-gg |
210 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
11240124 |
atgggtaatttgggaaagcacattagccaccaaaaattgaattcctaaattgtttttgaaaagctccaacttttagcttctggtagacgtgagtttgagg |
11240025 |
T |
|
| Q |
211 |
ggttgaatcacgtttggctgaatcactttcgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgctccagactcacgtttgtacccaca |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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|
| T |
11240024 |
ggttgaatcacgtttggctaaatcacttttgcagttatccaaacaccacaaaaatagaaaaactgcgtttgagtgctcctgactcacgtttgt-gccaca |
11239926 |
T |
|
| Q |
311 |
aaacggataaccaaatgagcac |
332 |
Q |
| |
|
||| || |||||||| |||||| |
|
|
| T |
11239925 |
aaatgggtaaccaaacgagcac |
11239904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 34433805 - 34433881
Alignment:
| Q |
60 |
atcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatcatgggtaatttgggaaagtacatca |
136 |
Q |
| |
|
||||||||||||||||| | | |||||||| | |||||||||||||| |||| || ||||||||||||| |||||| |
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|
| T |
34433805 |
atcactttggctgtgttattttcaactttgtaggaaaatgaaaaagaagatcagggttaatttgggaaagcacatca |
34433881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 48556139 - 48555834
Alignment:
| Q |
12 |
atgaaggcagaaacgtggtcgagaaagaatttaagcaacaaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatc |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48556139 |
atgaaggcagaaacagggtcgagaaagaatttgagcaacaaaaaattcatcacttttgctgtgttttataaaactttgtcgaaaaatgaaaaagaatatc |
48556040 |
T |
|
| Q |
112 |
atgggtaatttgggaaagtacatcagccaccaaaagttgaattcctaaattgcttttgaaaagctccaacttttagcttatggtagacgtgagtttgggg |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
48556039 |
atgggtaatttaggaaagtacatcagccaccaaaagttgaattcctaaattgcttttgaaaagctccaacttttagcttctggtaaacgtgagtttgggg |
48555940 |
T |
|
| Q |
212 |
gttgaatcacgtttggctgaatcactttcgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgctccagactcacgtttgtacccacaa |
311 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
48555939 |
gttgaa---------------tcacttttgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgcttcagactcacgtttgtacccacaa |
48555855 |
T |
|
| Q |
312 |
aacggataaccaaatgagcac |
332 |
Q |
| |
|
||||| |||||||| |||||| |
|
|
| T |
48555854 |
aacgggtaaccaaacgagcac |
48555834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 518382 - 518106
Alignment:
| Q |
12 |
atgaaggcagaaacgtggtcgagaaagaatttaagcaacaaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatc |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
518382 |
atgaaggcagaaacagggtcgagaaagaatttgagcaacaaaaaattcatcactttggctgtgttttatacaactttgtcgaaaaatgaaaaagaatatc |
518283 |
T |
|
| Q |
112 |
atgggtaatttgggaaagtacatcagccaccaaaagttgaattcctaaattgcttttgaaaagctccaacttttagcttatggtagacgtgagtttg-gg |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |
|
|
| T |
518282 |
atgggtaatttgggaaagcacatcagccaccaaaaattgaattcctaaattgcttttgaaaagatccaacttttagcttctggtagacgtgagtttgggg |
518183 |
T |
|
| Q |
211 |
ggttgaatcacgtttggctgaatcactttcgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgct |
287 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
518182 |
ggttgaatcacgttttgctgaatcacttttgcagttacccaaacaccacaaaaatagaaaaactgcatttgagtgct |
518106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 35606693 - 35606387
Alignment:
| Q |
28 |
ggtcgagaaagaatttaagcaacaaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaa---tatcatgggtaatttgg |
124 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
35606693 |
ggtcgagaaagaatttgagcaacaacaaattcatcattttggctgtgttttatacaactttgttgaaaaatgaaaaagaagaatatcatgggtaatttgg |
35606594 |
T |
|
| Q |
125 |
gaaagtacatcagccaccaaaagttgaattcctaaattgcttttgaaaagctccaacttttagcttatggtagacgtgagtttgggggttgaatcacgtt |
224 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
35606593 |
gaaagtatatcagccaccaaaaattga--tcctaaattgcttttgaaaagctccaacttttaacttctggtagacgtgagtttggggattgaatcacgtt |
35606496 |
T |
|
| Q |
225 |
tggctgaatcactttcgcagttacccaaacaccacaaaaataga-aaaactgcttttgagtgctccagactcacgtttgtacccacaaaacggataacca |
323 |
Q |
| |
|
|| ||||||||||| | ||||| ||||||||| |||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
35606495 |
tgattgaatcacttttgtagttatccaaacaccttgaaaatagaaaaaactgcgtttaagtgctccaaactcacgtttgtacccacaaaacaggtaacca |
35606396 |
T |
|
| Q |
324 |
aatgagcac |
332 |
Q |
| |
|
|| |||||| |
|
|
| T |
35606395 |
aacgagcac |
35606387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 35 - 334
Target Start/End: Complemental strand, 15206503 - 15206202
Alignment:
| Q |
35 |
aaagaatttaagcaac-aaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatcatgggtaatttgggaaagtaca |
133 |
Q |
| |
|
||||||||| |||||| |||||||| |||| |||| ||| || |||| || |||| | |||||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
15206503 |
aaagaatttgagcaacgaaaaaattaatcatattggatgtattatatacaattttgcaggaaaatgaaaaagaagatcatggataatttaggaaagtaca |
15206404 |
T |
|
| Q |
134 |
tcagccaccaaaagttgaattcctaaattgcttttgaaaagctccaacttttagcttatggtagacgtgagtttg-ggggttgaatcacgtttggctgaa |
232 |
Q |
| |
|
|||||||| ||| |||||| || |||||||||| ||||||||||| || | |||| ||| ||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
15206403 |
tcagccacagaaaattgaatacccaaattgctttgcaaaagctccaatttatggcttctggaagacgtgagtttggggggttgaatctcgttttgctgaa |
15206304 |
T |
|
| Q |
233 |
tcactttcgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgctccagactcacgtttgtacccacaaaacggataaccaaatgagcac |
332 |
Q |
| |
|
||||||| || ||||||||||| ||||||| ||| |||||||| ||||||||||||||| |||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
15206303 |
tcactttttcaattacccaaacatcacaaaagtagcaaaactgcgtttgagtgctccagaagtgcgtttgaacccatcaaacggataaccaaacaagcac |
15206204 |
T |
|
| Q |
333 |
at |
334 |
Q |
| |
|
|| |
|
|
| T |
15206203 |
at |
15206202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 35 - 325
Target Start/End: Original strand, 1312935 - 1313236
Alignment:
| Q |
35 |
aaagaatttaagcaac-aaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatcatgggtaatttgggaaagtaca |
133 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1312935 |
aaagaatttgagcaacgaaaaaattcatcactttggctgtgttgtatacaactttgtaggaaaatgaaaaagaatatcatgggtaatttgggaaaataca |
1313034 |
T |
|
| Q |
134 |
tcagccaccaaaagttgaattcctaaattgcttttga---------aaagctccaacttttagcttatggtagacgtgagtttggggg-ttgaatcacgt |
223 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| |||||||||| || | | || ||||||||||||||||||||| || |||||||| |
|
|
| T |
1313035 |
tcagccaccaaaaattgaattccaaaattgcttttgagttgctgcaaaagctccaatttgtggtttctggtagacgtgagtttggggggttaaatcacgt |
1313134 |
T |
|
| Q |
224 |
ttggctgaatcactttcgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgctccagactcacgtttgtacccacaaaacggataacca |
323 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1313135 |
tttgttgaatcacttttgcagttacccaaacaccacaaaaatagcaaaactgcttttgagtgctccagactcacgtttgtacccacaaaacgggtaacca |
1313234 |
T |
|
| Q |
324 |
aa |
325 |
Q |
| |
|
|| |
|
|
| T |
1313235 |
aa |
1313236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 35 - 314
Target Start/End: Complemental strand, 34557732 - 34557442
Alignment:
| Q |
35 |
aaagaatttaagcaacaaaaaattt-atcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatcatgggtaatttgggaaagtaca |
133 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
34557732 |
aaagaatttgagcaacaaaaaaattcatcactttggctgtgttgtatacaactttgtaggaaaatgaaaaagaatatcatgggtaatttgcgaaaataca |
34557633 |
T |
|
| Q |
134 |
tcagccaccaaaagttgaattcctaaattgcttttg---------aaaagctccaacttttagcttatggtagacgtgagttt-gggggttgaatcacgt |
223 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||| | | |||| | |||||| ||||||| ||||| |||||||| |
|
|
| T |
34557632 |
tcagccaccaaaagttgaattctaaaattgcttttgagttgctgcaaaagctccaattcatggcttctagtagacttgagtttaaagggtttaatcacgt |
34557533 |
T |
|
| Q |
224 |
ttggctgaatcactttcgcagttacccaaacaccacaaaaatagaaaaactgcttttgagtgctccagactcacgtttgtacccacaaaac |
314 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34557532 |
tttgttgaatcacttttgcagttacccaaacaccacaaaaatagcaaaactgtttttgagtgctccagactcacgtttgtacccacaaaac |
34557442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 15883745 - 15883634
Alignment:
| Q |
51 |
aaaaaatttatcactttggctgtgttttataaaactttgtcgaaaaatgaaaaagaatatcatgggtaatttgggaaagtacatcagccaccaaaagttg |
150 |
Q |
| |
|
|||||| | ||||||||||||||||| | | |||||||| | |||||||||||||| | || || ||||||||||||| |||||| ||| |||| || |
|
|
| T |
15883745 |
aaaaaagtcatcactttggctgtgttattttcaactttgtaggaaaatgaaaaagaagagcaaggttaatttgggaaagcacatcaaccataaaaaatta |
15883646 |
T |
|
| Q |
151 |
aattcctaaatt |
162 |
Q |
| |
|
||||||| |||| |
|
|
| T |
15883645 |
aattccttaatt |
15883634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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