View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_3 (Length: 659)
Name: NF15081_low_3
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 479
Target Start/End: Complemental strand, 3568132 - 3567677
Alignment:
| Q |
14 |
cataggcactagttcaataggcagcatttcccatttcactgcaaataaacaagaagcaaaagttatagtaattaattgcaactcaaattgtaaaagaatg |
113 |
Q |
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| T |
3568132 |
cataggtactagttcaataggcagcatttcccatttcactgcaaataaacaagaagcaaaagttatagtaattaattgcaactcaaattgtaaaagaatg |
3568033 |
T |
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| Q |
114 |
tatatacatttgatatgttaggggtaaattctattaacccctgccatannnnnnnnnnnnnnnnnnnnnaatatactatgtgcatatattaagtattgac |
213 |
Q |
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| T |
3568032 |
tatatacatttgat-----------aaattctattaacccctaccatattttttagtttatttttgtttaatatattatgtgcatatattaagtattgac |
3567944 |
T |
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| Q |
214 |
ttggtcatcatctacaatatatattaaacaaactaaactatattatataagttaatagattgaatatgcaattccctcnnnnnnnga-ttgaatatgcaa |
312 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
3567943 |
ttggtaatcatctacaatatatattaaacaaactaaactatattatataagttaatagattgaatatgcaattccctaaaaaaaaaaattgaatatgcaa |
3567844 |
T |
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| Q |
313 |
ttctccacttcttagcactaactgcgtgtaaatttcgccacttgactcattagaaaataagtgttttatatagaacacataaaaattcataaagaataaa |
412 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567843 |
ttctccacttctcagcactaactgcgtgtaaatttcgccacttgactcattagaaaataagtgttttatatagaacacataaaaattcataaagaataaa |
3567744 |
T |
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| Q |
413 |
taagaaatgttacaattatcggccgcaacaacagaggttttgcaactgacgacacacacaagaagta |
479 |
Q |
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| T |
3567743 |
taagaaatgttacaattattggccgcaacaacagaggttttgcaaatgacgacacaaacaggaagta |
3567677 |
T |
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