View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_32 (Length: 325)
Name: NF15081_low_32
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 23031814 - 23031510
Alignment:
| Q |
1 |
agaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggccaattcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031814 |
agaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggccaattcgtg |
23031715 |
T |
|
| Q |
101 |
gatgatccnnnnnnngttcgtaacggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattcggttgcgc |
200 |
Q |
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| T |
23031714 |
gatgatccaaaaaaagttcgtaaaggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattcggttgcgc |
23031615 |
T |
|
| Q |
201 |
ttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaactaatgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031614 |
ttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaactaatgtg |
23031515 |
T |
|
| Q |
301 |
ggtag |
305 |
Q |
| |
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||||| |
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| T |
23031514 |
ggtag |
23031510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41065380 - 41065273
Alignment:
| Q |
1 |
agaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggccaattcgtg |
100 |
Q |
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||||||||||||||||||||||||||| ||||| || || ||||| || |||||||||||||| || || || || ||||||||||| || ||||| || |
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| T |
41065380 |
agaaggactcaacaatgcaataaactcaacaaccgttgtggcagtactaatagcaacggttgcatttgctgcgattttcactgtccctggtcaatttgtt |
41065281 |
T |
|
| Q |
101 |
gatgatcc |
108 |
Q |
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|||||||| |
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| T |
41065280 |
gatgatcc |
41065273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 41065196 - 41065080
Alignment:
| Q |
185 |
tttgattcggttgcgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctatta |
284 |
Q |
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|||||||| |||| || ||||| || || || |||||||| |||||||| || | |||||| | |||||||||||||||||||||||| |||||| | |
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| T |
41065196 |
tttgattctattgcactcttcatttctctggctgttgtggttgttcaaacttcggttgttgttatcgaaagcaaagcaaagaaacaaatggcggctataa |
41065097 |
T |
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| Q |
285 |
ttaacaaactaatgtgg |
301 |
Q |
| |
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|||| || ||||||||| |
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| T |
41065096 |
ttaataagctaatgtgg |
41065080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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