View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_33 (Length: 322)

Name: NF15081_low_33
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_33
NF15081_low_33
[»] chr5 (2 HSPs)
chr5 (17-302)||(11893070-11893362)
chr5 (17-80)||(15275290-15275353)
[»] chr8 (4 HSPs)
chr8 (17-89)||(19476692-19476764)
chr8 (17-89)||(19547617-19547689)
chr8 (17-80)||(19585010-19585073)
chr8 (18-112)||(28326421-28326514)
[»] chr7 (2 HSPs)
chr7 (17-80)||(24806098-24806161)
chr7 (18-102)||(26281523-26281606)
[»] chr6 (2 HSPs)
chr6 (17-80)||(1709399-1709462)
chr6 (17-80)||(17791982-17792045)
[»] chr3 (2 HSPs)
chr3 (17-80)||(12413178-12413241)
chr3 (17-80)||(18150902-18150965)
[»] chr2 (2 HSPs)
chr2 (17-80)||(24222446-24222509)
chr2 (194-307)||(41816460-41816573)
[»] chr4 (1 HSPs)
chr4 (17-80)||(1774075-1774138)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 11893070 - 11893362
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagagatattgataataatgatataactcaaaatataaatct 116  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  11893070 atcatcttcctcttctccatcaatgcatcttaaaataagacaaaaaacaattaacagttaaagagatggataataatgatataactcaaaatataaatct 11893169  T
Q  117 aactgtagt-gaagtagtgacatctaaataccacttgtattaacc------atatagaacttatattaaataaatcagattttgggacaccaccgtaagc 209  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||      |||||||| ||||||||||||||| |||||||||||||||||| ||| |    
T  11893170 aactgtagtggaagtagtggcatctaaataccacttgtattaaccatatatatatagaatttatattaaataaataagattttgggacaccaccttaaac 11893269  T
Q  210 ataaaaataagattacttgcttgagcatcaagaaaactttttggtaaattttcaataagcaagttccaaatttccagcactcaaaaatacatc 302  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||    
T  11893270 ataaaaattagatgacttgcttgagcatcaagaaaactttttggtaaatttttaataagcaagttcaaaatttccggcactcaaaattacatc 11893362  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 15275290 - 15275353
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15275290 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga 15275353  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 19476692 - 19476764
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagagatattgataa 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  19476692 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggataa 19476764  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 19547617 - 19547689
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagagatattgataa 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  19547617 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggataa 19547689  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 19585073 - 19585010
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19585073 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagaga 19585010  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 28326421 - 28326514
Alignment:
Q  18 tcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagagatattgataataatgatataactcaaaatataa 112  Q
    |||||||||||||||||||||| | |||||  |||| ||||||||  |||||| ||||||||| || | || |||||||||||||  ||||||||    
T  28326421 tcatcttcctcttctccatcaatgaacctttgaata-gaccaaaagtaattaatagttagagaaatggctattaatgatataactggaaatataa 28326514  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 24806161 - 24806098
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24806161 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga 24806098  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 26281523 - 26281606
Alignment:
Q  18 tcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagagatattgataataatgatataact 102  Q
    ||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||||||||| || | || |||||||||||||    
T  26281523 tcatcttcctcttctccatcaataaaccttaaaata-gaccaaaagcaattaacagttagagaaatagctattaatgatataact 26281606  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 1709462 - 1709399
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1709462 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga 1709399  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 17791982 - 17792045
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  17791982 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagaga 17792045  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 12413178 - 12413241
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12413178 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga 12413241  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 18150902 - 18150965
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18150902 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga 18150965  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 24222446 - 24222509
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24222446 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga 24222509  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 41816460 - 41816573
Alignment:
Q  194 ggacaccaccgtaagcataaaaataagattacttgcttgagcatcaagaaaactttttggtaaattttcaataagcaagttccaaatttccagcactcaa 293  Q
    |||||||||| ||| ||||||| ||||||   ||  ||||| ||||| ||||||||||||||| ||| ||||||||||| |||| | ||||||||| |||    
T  41816460 ggacaccaccttaaacataaaagtaagatggattctttgagaatcaacaaaactttttggtaagtttccaataagcaagatccacagttccagcacacaa 41816559  T
Q  294 aaatacatctagct 307  Q
    ||||||||| ||||    
T  41816560 aaatacatccagct 41816573  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1774075 - 1774138
Alignment:
Q  17 atcatcttcctcttctccatcaacgcaccttaaaataagaccaaaaacaattaacagttagaga 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  1774075 atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagaga 1774138  T

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