View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15081_low_37 (Length: 304)
Name: NF15081_low_37
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6732685 - 6732996
Alignment:
| Q |
1 |
taaacagtatagagacatggataaacatatataagtcacatactatgatgttagaaaagaacacaatgatcgttttttctagtctttgaactgtgttgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6732685 |
taaacagtatagagacatggataaacatatataagtcacgtactatgatgttagaaaagaacacaatgatcgttttttctagtctttgaactgtgttgtg |
6732784 |
T |
|
| Q |
101 |
tcaaat--------------------acatctagcaaatcatcactcatttaggcgcattagcataataat----gaacctgttgttgacacttttacac |
176 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6732785 |
tcatatggaattgatcatcattttgtacatctagcaaatcatcactcatttaggcgcattagcataataattaatgaacctgttgttgacacttttacac |
6732884 |
T |
|
| Q |
177 |
nnnnnnnacacttgcaaaattaactattttgac---aattaaggataatgtaccacaccttattcaaagcaaaataaaagataatgtaccgacctaatat |
273 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6732885 |
tttttttacacttgcaaaattaactattttgaccttaattaaggataatgtaccacaccttattcaaagcaaaataaaagataatgtaccgacctaatat |
6732984 |
T |
|
| Q |
274 |
gtttatgtttat |
285 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6732985 |
gtttatgtttat |
6732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University