View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_38 (Length: 301)

Name: NF15081_low_38
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_38
NF15081_low_38
[»] chr1 (2 HSPs)
chr1 (19-290)||(7582346-7582617)
chr1 (54-286)||(7098633-7098865)
[»] chr4 (2 HSPs)
chr4 (25-290)||(13615818-13616081)
chr4 (69-184)||(20297268-20297383)
[»] chr5 (17 HSPs)
chr5 (34-290)||(17982132-17982388)
chr5 (68-184)||(30243036-30243152)
chr5 (68-184)||(30399388-30399504)
chr5 (68-195)||(30059669-30059796)
chr5 (68-184)||(30748966-30749082)
chr5 (72-118)||(17418837-17418883)
chr5 (68-118)||(30474761-30474811)
chr5 (72-118)||(30522299-30522345)
chr5 (72-118)||(30562639-30562685)
chr5 (68-182)||(30714098-30714212)
chr5 (68-184)||(30482727-30482843)
chr5 (68-184)||(30677832-30677948)
chr5 (75-113)||(30205907-30205945)
chr5 (68-181)||(29871512-29871625)
chr5 (69-118)||(30430335-30430384)
chr5 (68-112)||(29852694-29852738)
chr5 (213-245)||(30474637-30474669)
[»] chr7 (1 HSPs)
chr7 (78-241)||(26706598-26706761)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 7582346 - 7582617
Alignment:
Q  19 atggttgcacaatgattcatctgttaagaccagtattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7582346 atggttgcacaatgattcatctgttaagaccactattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 7582445  T
Q  119 gatttttacaaaggtttatgcttcccaagttggatcagaactcttagtaatttagttactcttgaaattaagggttgcatgcattgtgaacggttttcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7582446 gatttttacaaaggtttatgcttcccaagttggatcagaactcttggtaatttagttactcttgaaattaagggttgcatgcactgtgaacggttttcat 7582545  T
Q  219 cacttggtaaactaccatctctaaaaacacttcaattaaccttggtgtctgtgaaatacttggatgatgatg 290  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7582546 cacttggtaaactaccatctctaaaaacacttcaaataaccttggtgtctgtgaaatacttggatgatgatg 7582617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 54 - 286
Target Start/End: Complemental strand, 7098865 - 7098633
Alignment:
Q  54 ttattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggat 153  Q
    |||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |||||||| |||||||||||    
T  7098865 ttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggat 7098766  T
Q  154 cagaactcttagtaatttagttactcttgaaattaagggttgcatgcattgtgaacggttttcatcacttggtaaactaccatctctaaaaacacttcaa 253  Q
    ||||||||||||||||||||||||||||||| ||     |||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||   |    
T  7098765 cagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccatatctaaaaaaactcata 7098666  T
Q  254 ttaaccttggtgtctgtgaaatacttggatgat 286  Q
    |||  |   ||||||||||||||||||||||||    
T  7098665 ttattcggtgtgtctgtgaaatacttggatgat 7098633  T

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Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 13616081 - 13615818
Alignment:
Q  25 gcacaatgattcatctgttaagaccagtattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttt 124  Q
    |||||| ||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||| |    
T  13616081 gcacaaagattcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttca-cctctc-caaatctcaagagcttgaaaatatattct 13615984  T
Q  125 tacaaaggtttatgcttcccaagttggatcagaactcttagtaatttagttactcttgaaattaagggttgcatgcattgtgaacggttttcatcacttg 224  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||| |||||||||||||||||||    
T  13615983 tacaaaggattatgcttctcaagttggatcagaactcatagtaatttagttactcttaaagttaaggattgcgtgcattgagaacggttttcatcacttg 13615884  T
Q  225 gtaaactaccatctctaaaaacacttcaattaaccttggtgtctgtgaaatacttggatgatgatg 290  Q
    ||||||||||||||||||||  ||| || ||| ||   |||||||||||| ||||| |||| ||||    
T  13615883 gtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttgaatgaggatg 13615818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 20297268 - 20297383
Alignment:
Q  69 aagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagtaa 168  Q
    ||||||| |||||||||||||||||  ||||||||||| ||||| ||||| |||  ||  | || || || || ||||||||||| |  | |||||||||    
T  20297268 aagtactcgaagtgcttcaacctcagtcaaatctcaagtgcttggaaataaattgctatgatggattgtggttaccaagttggataattattcttagtaa 20297367  T
Q  169 tttagttactcttgaa 184  Q
    ||||||| || |||||    
T  20297368 tttagtttcttttgaa 20297383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 290
Target Start/End: Complemental strand, 17982388 - 17982132
Alignment:
Q  34 ttcatctgttaagaccagtattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggt 133  Q
    ||||||||| ||||||  |||||||||||| ||||  ||| ||||||||||||||||||||| |||||| ||| ||||||||||| ||| |||| ||||     
T  17982388 ttcatctgtcaagacccctattattagtgatgatcgtgtatttgaagtgcttcaacctcacagaaatcttaagggcttgaaaatatattattaccaagga 17982289  T
Q  134 ttatgcttcccaagttggatcagaactcttagtaatttagttactcttgaaattaagggttgcatgcattgtgaacggttttcatcacttggtaaactac 233  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||    |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  17982288 ttatgcttcccaagttggatcagaactcttagcaatttacttactcttattgttaaggattgcatgctttgtgaacggttttcatcacttggtaaactac 17982189  T
Q  234 catctctaaaaacacttcaattaaccttggtgtctgtgaaatacttggatgatgatg 290  Q
    |||||||||||| |||| || ||  |   ||||||||||||||||||||||||||||    
T  17982188 catctctaaaaaaacttgaactattcaatgtgtctgtgaaatacttggatgatgatg 17982132  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 30243036 - 30243152
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||| ||  | || |||| ||| ||||||||||| |    ||||||||    
T  30243036 caagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataagtttctatgagggattatccttaccaagttggataattcttcttagta 30243135  T
Q  168 atttagttactcttgaa 184  Q
    ||||| || ||||||||    
T  30243136 atttaatttctcttgaa 30243152  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 30399504 - 30399388
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||  ||  | || ||||  || ||||||||||| |  | ||||||||    
T  30399504 caagtactcgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggataattattcttagta 30399405  T
Q  168 atttagttactcttgaa 184  Q
    |||||||| ||||||||    
T  30399404 atttagtttctcttgaa 30399388  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 30059796 - 30059669
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||||||||  ||| ||  | || |||| ||| ||||||||||| |  | ||||||||    
T  30059796 caagtacttgaagttcttcaacctcactcaaatctcaactgcttgaaaataagtttctatgagggattatccttgccaagttggataattattcttagta 30059697  T
Q  168 atttagttactcttgaaattaagggttg 195  Q
    |||||||| ||||| || ||||| ||||    
T  30059696 atttagtttctcttaaacttaagcgttg 30059669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 30749082 - 30748966
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||| |||| |||  ||  |||| ||||  || ||||||||||| |  | ||||||||    
T  30749082 caagtacttgaagtgcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagta 30748983  T
Q  168 atttagttactcttgaa 184  Q
    ||||| || ||||||||    
T  30748982 atttaatttctcttgaa 30748966  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 17418837 - 17418883
Alignment:
Q  72 tacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 118  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  17418837 tacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaata 17418883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 30474811 - 30474761
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 118  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  30474811 caagtacttgaaatgcttcaacctcactcaaatctcaagaggttgaaaata 30474761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 30522299 - 30522345
Alignment:
Q  72 tacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 118  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  30522299 tacttgaagtgcttcaacctcactcaaatctcaagatcttgaaaata 30522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 30562639 - 30562685
Alignment:
Q  72 tacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 118  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  30562639 tacttgaagtgcttcaacctcactcaaatctcaagatcttgaaaata 30562685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 30714098 - 30714212
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    |||||||| |||| ||||||||||||| ||||||||||  |||||| |||| |||  ||  |||| ||||  || ||||||||||| |  | ||||||||    
T  30714098 caagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattaccaagttggataattattcttagta 30714197  T
Q  168 atttagttactcttg 182  Q
    |||||||| ||||||    
T  30714198 atttagtttctcttg 30714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 30482843 - 30482727
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    ||||||||||||| ||||||||||||| ||||||||||  |||||| |||| |||   |  |||| ||||  || ||||||||||| ||   ||||||||    
T  30482843 caagtacttgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattacaatgaagggttatcgttaccaagttggataagccttcttagta 30482744  T
Q  168 atttagttactcttgaa 184  Q
    ||||| || ||||||||    
T  30482743 atttaatttctcttgaa 30482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 30677832 - 30677948
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    |||||||||||||||||| |||||||| ||||||||||  |||||| |||| |||  ||  || | ||||  || ||||||||||| |  | ||||||||    
T  30677832 caagtacttgaagtgcttaaacctcactcaaatctcaaatgcttgacaataaattactatgaaagattatcgttaccaagttggataattattcttagta 30677931  T
Q  168 atttagttactcttgaa 184  Q
    ||||| || ||||||||    
T  30677932 atttaatttctcttgaa 30677948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 30205945 - 30205907
Alignment:
Q  75 ttgaagtgcttcaacctcacacaaatctcaagagcttga 113  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  30205945 ttgaagtgcttcaacctcactcaaatctcaagaggttga 30205907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 29871625 - 29871512
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagta 167  Q
    |||||||| |||| ||||||||||||| ||||||||||  |||||| |||| |||  ||  |||| ||||  || ||||||||||| |  | ||||||||    
T  29871625 caagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagta 29871526  T
Q  168 atttagttactctt 181  Q
    ||||| || |||||    
T  29871525 atttaatttctctt 29871512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 30430384 - 30430335
Alignment:
Q  69 aagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaata 118  Q
    |||||||||||||||||||| ||||| ||||||| ||||  |||||||||    
T  30430384 aagtacttgaagtgcttcaatctcactcaaatcttaagattttgaaaata 30430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 29852738 - 29852694
Alignment:
Q  68 caagtacttgaagtgcttcaacctcacacaaatctcaagagcttg 112  Q
    |||||||| |||| ||||||||||||| ||||||||||| |||||    
T  29852738 caagtactcgaagagcttcaacctcactcaaatctcaagtgcttg 29852694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 30474669 - 30474637
Alignment:
Q  213 tttcatcacttggtaaactaccatctctaaaaa 245  Q
    |||||||||| ||||||||||||||||||||||    
T  30474669 tttcatcactaggtaaactaccatctctaaaaa 30474637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 26706761 - 26706598
Alignment:
Q  78 aagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttagtaatttagttac 177  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| | |  ||| | || ||||  || ||||||||| | || | |||||||||||||||| |    
T  26706761 aagtgcttcaacctcactcaaatctcaagtgcttggaaataaagtactacgacggattatcattaccaagttgggtaagtattcttagtaatttagtttc 26706662  T
Q  178 tcttgaaattaagggttgcatgcattgtgaacggttttcatcacttggtaaactaccatctcta 241  Q
    ||||||| ||  || ||||| | | | ||  ||| || | | ||||||||||||||||||||||    
T  26706661 tcttgaacttggggattgcaagaaatttgtgcggcttccgttacttggtaaactaccatctcta 26706598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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