View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_39 (Length: 282)
Name: NF15081_low_39
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 6808208 - 6807954
Alignment:
| Q |
18 |
gtttccttttgattgacctttacctttattgagatagtaatcattaattgtccaaataacaatacgcagagtgagtagcaaacacgagaaggaaaacaat |
117 |
Q |
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| T |
6808208 |
gtttccttttgattgaccttcacctttattgagatagtaatcattaattgtccaaataagaatacgcagagtgagtaacaaacccgagatggaaaacaat |
6808109 |
T |
|
| Q |
118 |
ccaatccaaattttaagcaccgttgaaagtaaattctcattaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808108 |
ccaatccaaattttaagcaccgttgaaagtaatttctcattaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaa |
6808009 |
T |
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| Q |
218 |
gagttgttagagtgaaagacatccccatagataaaagccacatagtaaacctatg |
272 |
Q |
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| T |
6808008 |
gagttgttagagtgaaagacatccccatagataaaagccacatagtaaacctatg |
6807954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 6836109 - 6835893
Alignment:
| Q |
56 |
aatcattaattgtccaaataacaatacgcagagtgagtagcaaacacgagaaggaaaacaatccaatccaaattttaagcaccgttgaaagtaaattctc |
155 |
Q |
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||||| ||||| |||||||| ||||||||| ||||||| |||| |||||| |||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
6836109 |
aatcactaattccccaaataataatacgcagtgtgagtaagaaacccgagaaagaaaacaatccaatccaaatacgaagcaatgttgaaagtaaaacctc |
6836010 |
T |
|
| Q |
156 |
attaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagc |
255 |
Q |
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| T |
6836009 |
attatcagcccagacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtgaaacacatgctaatagaaaaaagc |
6835910 |
T |
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| Q |
256 |
cacatagtaaacctatg |
272 |
Q |
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||||||||||||||||| |
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| T |
6835909 |
cacatagtaaacctatg |
6835893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 6634045 - 6633942
Alignment:
| Q |
169 |
acaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagccacatagtaaacc |
268 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||| | ||||| ||||||||||||||||||| |
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| T |
6634045 |
acaggaactggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtgaaacacatgctaatagaaaaaagccacatagtaaacc |
6633946 |
T |
|
| Q |
269 |
tatg |
272 |
Q |
| |
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|||| |
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| T |
6633945 |
tatg |
6633942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 6632948 - 6632732
Alignment:
| Q |
56 |
aatcattaattgtccaaataacaatacgcagagtgagtagcaaacacgagaaggaaaacaatccaatccaaattttaagcaccgttgaaagtaaattctc |
155 |
Q |
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||||| ||||| |||||||| ||||||||| ||||||| ||||| |||||||||||||||||| |||||||| | ||||| ||||||||| |||| | |
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| T |
6632948 |
aatcactaattccccaaataataatacgcagtgtgagtaacaaacccgagaaggaaaacaatcccatccaaatataaagcaacgttgaaagaaaatccaa |
6632849 |
T |
|
| Q |
156 |
attaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagc |
255 |
Q |
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|| | | | | ||||||||||| |||| || |||||| ||||||||||||||||| ||| ||||||||| ||||||| ||||||| |||| |
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| T |
6632848 |
cgtatcatcccagagaatatctggggtaatcattcctactgctatgtcgtaagtaacaagaagagatgtgagagtgaaacacatccctatagatacaagc |
6632749 |
T |
|
| Q |
256 |
cacatagtaaacctatg |
272 |
Q |
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||||||||||||||||| |
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| T |
6632748 |
cacatagtaaacctatg |
6632732 |
T |
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