View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_4 (Length: 645)
Name: NF15081_low_4
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 221 - 627
Target Start/End: Original strand, 11375942 - 11376348
Alignment:
| Q |
221 |
acaccagaataatggtcgaatgacgaatacagaaacctggacaaagagagagaaatgtattcaatatgtatattcaactacaccttcttttgtgtataag |
320 |
Q |
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| T |
11375942 |
acaccagaaaaatggtcgaatgacgaatacagaaacctggacaaagagagaaaaatgtattcaatatgtatattcaactacaccttcttttgtgtataag |
11376041 |
T |
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| Q |
321 |
atgttgagattctaaaacagcaagtaaatacattgctggttcaaagttcaaactatatcaaacaccattgttaaactaataaatcaatacaatcttcacg |
420 |
Q |
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| T |
11376042 |
atgttgagattctaaaacagcaagtaaatacattgctggttcaaagttcaaactatatcaaacaccattgttaaactaataaatcaatacaatcttcacg |
11376141 |
T |
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| Q |
421 |
caaagtctagttcaacttcatttggttctgtcaattaaacaaacacaacaaaggcatcacacattaactaattaaaacaacaaaaccatagattactctg |
520 |
Q |
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| T |
11376142 |
caaagtctagttcaacttcatttggttctgtcaattaaacaaacacaacaaaggcatcacacattaactaattaaaacaacaaaaccatagattactctg |
11376241 |
T |
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| Q |
521 |
tcaaaaaattaataactggtttgatttttcacaatcaatgtaacaaacgcattcaaaatataaaatagcatagaaaataaagattgcacagaaagctata |
620 |
Q |
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| T |
11376242 |
tcaaaaaattaataactggtttgaattttcacaatcaatgtaacaaacgcattcaaaatataaaatagcatagaaaataaagattgcacaaaaagctata |
11376341 |
T |
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| Q |
621 |
tcataag |
627 |
Q |
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| T |
11376342 |
tcataag |
11376348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 11375750 - 11375944
Alignment:
| Q |
1 |
aataatcgatagagagaaataagaccgagacttacaaggaaccattgagaagggtgtttgcacaaaatctgtttttgttaggaagccagaaactgcagtg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11375750 |
aataatggatagagagaaataagaccgagacttacaaggaaccactgagaagggtgtttgcacaaaatctgtttttgttaggaagccagaaactgcagcg |
11375849 |
T |
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| Q |
101 |
cttagtctccatattacttcccaggtagccttaaattatggttttcggtaaattttctaataactgaataaccaaaggtcagcggagtcagcaca |
195 |
Q |
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| T |
11375850 |
cttagtctccatattacttcccaggtagccttaaattatggttttcggtagattttctaataactgaataaccaaaggtcagcggagtcaacaca |
11375944 |
T |
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