View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_40 (Length: 281)

Name: NF15081_low_40
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_40
NF15081_low_40
[»] chr7 (8 HSPs)
chr7 (16-107)||(30949577-30949668)
chr7 (190-238)||(30949834-30949881)
chr7 (139-190)||(1085625-1085676)
chr7 (140-190)||(45434734-45434784)
chr7 (213-266)||(34218129-34218182)
chr7 (138-190)||(7517678-7517730)
chr7 (214-266)||(10341842-10341894)
chr7 (139-190)||(14681608-14681657)
[»] chr2 (7 HSPs)
chr2 (139-189)||(3673167-3673217)
chr2 (139-190)||(6422208-6422259)
chr2 (215-266)||(7598619-7598670)
chr2 (139-190)||(23346334-23346385)
chr2 (139-190)||(37632606-37632657)
chr2 (213-266)||(962608-962661)
chr2 (215-260)||(28254209-28254254)
[»] chr6 (5 HSPs)
chr6 (139-190)||(10074372-10074423)
chr6 (139-190)||(10073625-10073676)
chr6 (139-189)||(10911665-10911715)
chr6 (140-189)||(2579119-2579168)
chr6 (141-190)||(5832038-5832087)
[»] chr4 (10 HSPs)
chr4 (139-190)||(23817688-23817739)
chr4 (139-190)||(36608668-36608719)
chr4 (138-190)||(50002524-50002576)
chr4 (139-190)||(25483434-25483485)
chr4 (139-190)||(36629335-36629386)
chr4 (139-190)||(39792867-39792918)
chr4 (139-190)||(44620451-44620502)
chr4 (139-190)||(45489339-45489390)
chr4 (139-190)||(54017602-54017653)
chr4 (215-264)||(54741273-54741322)
[»] chr3 (4 HSPs)
chr3 (215-266)||(33175761-33175812)
chr3 (139-190)||(39934964-39935015)
chr3 (138-190)||(54017824-54017876)
chr3 (138-190)||(54018206-54018258)
[»] chr1 (11 HSPs)
chr1 (138-189)||(4266806-4266855)
chr1 (126-190)||(41157473-41157536)
chr1 (213-261)||(44091909-44091957)
chr1 (139-190)||(11977378-11977429)
chr1 (215-266)||(22077592-22077643)
chr1 (215-266)||(41184522-41184573)
chr1 (213-266)||(22793288-22793341)
chr1 (140-189)||(39066210-39066259)
chr1 (141-185)||(24131999-24132043)
chr1 (139-191)||(24600323-24600375)
chr1 (138-190)||(41157089-41157141)
[»] chr8 (5 HSPs)
chr8 (139-190)||(34834974-34835025)
chr8 (140-190)||(45122067-45122117)
chr8 (217-266)||(40518592-40518641)
chr8 (213-266)||(41972168-41972221)
chr8 (150-190)||(33113387-33113427)
[»] chr5 (8 HSPs)
chr5 (215-266)||(623828-623879)
chr5 (139-190)||(3295354-3295405)
chr5 (215-266)||(9498751-9498802)
chr5 (139-190)||(35167847-35167898)
chr5 (215-266)||(41632792-41632843)
chr5 (139-189)||(36492226-36492276)
chr5 (138-190)||(26074154-26074206)
chr5 (138-190)||(26074710-26074762)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 30949577 - 30949668
Alignment:
Q  16 gcaaaagcaagtaccttttctttttgttgatatgaaaaaagagattatgagggacagcaaagattctgggaaatttacccgaagaaacgctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  30949577 gcaaaagcaagtaccttttctttttgttgatatgaaaaaagagattatgagggacagcaaagattctgggaaatttacatgaagaaacgctt 30949668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 30949834 - 30949881
Alignment:
Q  190 catcaatatatttacaggtcaattcacttataaagtgttcaaccttttc 238  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  30949834 catcaatatatttacaggtct-ttcacttataaagtgttcaactttttc 30949881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 1085625 - 1085676
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| ||||||||| ||  |||||||||||    
T  1085625 ccacatcgaggctagaacaaccacacaagtaagagagacgccacactcttac 1085676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 45434784 - 45434734
Alignment:
Q  140 cacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  45434784 cacatcgaggctagaacaactccacaagtaagagagacatcacactcttac 45434734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 34218129 - 34218182
Alignment:
Q  213 tcacttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||||| ||||||||| ||| ||||| |||  ||||||||||||||||||    
T  34218129 tcacttataaggtgttcaacatttacttttttatccgatgtgagacatataact 34218182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 7517730 - 7517678
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| |||||||||||||||||| ||| ||| | ||| |||||||||||    
T  7517730 cccacatcgaggctagaacaaccacacaagtgagacagacaccacactcttac 7517678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 10341894 - 10341842
Alignment:
Q  214 cacttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||||||||||||||||   ||||| |||  ||||||||||||||||||    
T  10341894 cacttataaagtgttcaacctccacttttctatccgatgtgagacatataact 10341842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 14681657 - 14681608
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| ||||||||||||||||||| || ||||||||  |||||||||||    
T  14681657 ccacatcaaggctagaacaaccacacttgtgagagacac--cacactcttac 14681608  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 3673217 - 3673167
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactctta 189  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  3673217 ccacatcgaggctagaacaaccacactagtaagagagacatcacactctta 3673167  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 6422259 - 6422208
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| ||| |||||||||||    
T  6422259 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttac 6422208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 7598670 - 7598619
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||| ||||||||||||| ||||| ||| ||||||| |||||||||||    
T  7598670 acttataaggtgttcaacctttacttttttatctgatgtgggacatataact 7598619  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 23346385 - 23346334
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||| ||| || |||||| |||||||||||||||    
T  23346385 ccacatctaggctagaacaaccgcacaagcaagagagacatcacactcttac 23346334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 37632606 - 37632657
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||| |||||| |||||||| ||| |||||||||||    
T  37632606 ccacatcgaggctagaacaatcacacttgtaagagatacaccacactcttac 37632657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 962661 - 962608
Alignment:
Q  213 tcacttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||||| ||||||||||||| ||||| |||  |||||| |||||||||||    
T  962661 tcacttataaggtgttcaacctttacttttctatccgatgtgggacatataact 962608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 28254209 - 28254254
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacat 260  Q
    |||||||||||||||||||||| ||||| |||  ||||||||||||    
T  28254209 acttataaagtgttcaacctttacttttctatccgatgtgagacat 28254254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 10074372 - 10074423
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||||||||    
T  10074372 ccacatcgaggctagaacaaccacactagtgagagagacaccacactcttac 10074423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 10073625 - 10073676
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| | |||||||||||||||||||| ||||| ||| |||||||||||    
T  10073625 ccacatcgatgctagaacaaccacactagtgagagagacaccacactcttac 10073676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 10911715 - 10911665
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactctta 189  Q
    ||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||    
T  10911715 ccacatcgaggcttgaacaacaacattagtaagagagacatcacactctta 10911665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 2579119 - 2579168
Alignment:
Q  140 cacatccaggctagaacaaccacactagtaagagacacatcacactctta 189  Q
    |||||| |||||||||||||||||| || |||||| ||| ||||||||||    
T  2579119 cacatcgaggctagaacaaccacacgagcaagagagacaccacactctta 2579168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 5832038 - 5832087
Alignment:
Q  141 acatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||| |||||||||||||||||| ||||||||| ||| |||||| ||||    
T  5832038 acatcgaggctagaacaaccacacaagtaagagagacaccacacttttac 5832087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 23817688 - 23817739
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| ||||||||||||||||||||| |||||| ||| |||||||||||    
T  23817688 ccacatcgaggctagaacaaccacactagcaagagagacaccacactcttac 23817739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 36608668 - 36608719
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||||||||    
T  36608668 ccacatcgaggctagaacaaccacactagtgagagagacaccacactcttac 36608719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 50002576 - 50002524
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| |||||||||||||| ||| ||||||||| ||| |||||||||||    
T  50002576 cccacatcgaggctagaacaaccgcacaagtaagagagacaccacactcttac 50002524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 25483485 - 25483434
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| ||| |||||||||||    
T  25483485 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttac 25483434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 36629386 - 36629335
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| ||| |||||||||||    
T  36629386 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttac 36629335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 39792867 - 39792918
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| ||| |||||||||||    
T  39792867 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttac 39792918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 44620502 - 44620451
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| ||| |||||||||||||| || |||||| |||||||||||||||    
T  44620502 ccacatcaaggttagaacaaccacacaagcaagagaaacatcacactcttac 44620451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 45489339 - 45489390
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||| |||||||| || ||| |||||||||||||||    
T  45489339 ccacatcgaggctagaacaatcacactagcaaaagagacatcacactcttac 45489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 54017602 - 54017653
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||  || |||||| |||||||||||||||    
T  54017602 ccacatcgaggctagaacaaccacataagcaagagagacatcacactcttac 54017653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 54741273 - 54741322
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataa 264  Q
    |||||||| ||||||||||||| ||||| |||  ||||||||||||||||    
T  54741273 acttataaggtgttcaacctttacttttctatccgatgtgagacatataa 54741322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 33175761 - 33175812
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||| ||||||||||||| ||||| ||| |||||||||||||||||||    
T  33175761 acttataaggtgttcaacctttacttttctatctgatgtgagacatataact 33175812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 39934964 - 39935015
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| |||||||||||||||    
T  39934964 ccacatcgaggctagaacaaccacacaagcaagagagacatcacactcttac 39935015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 54017824 - 54017876
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| | |||||||||||||||| ||||||||| ||| |||||||||||    
T  54017824 cccacatcgaagctagaacaaccacacaagtaagagagacaccacactcttac 54017876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 54018206 - 54018258
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| |||||||||||||||||| || | |||| ||| |||||||||||    
T  54018206 cccacatcgaggctagaacaaccacacaagcatgagagacaccacactcttac 54018258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 4266806 - 4266855
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactctta 189  Q
    |||||||| |||||||||||||||||  ||||||||| ||||||||||||||    
T  4266806 cccacatcgaggctagaacaaccaca--agtaagagagacatcacactctta 4266855  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 41157536 - 41157473
Alignment:
Q  126 ttgagggaccgccccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||||||||| ||||| |||||||||||||||||| || |||| | ||| |||||||||||    
T  41157536 ttgagggaccgccc-acatcgaggctagaacaaccacacaagcaagacagacaccacactcttac 41157473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 44091957 - 44091909
Alignment:
Q  213 tcacttataaagtgttcaaccttttcttttatatatgatgtgagacata 261  Q
    |||||||||||||||||||||||| |||||| || ||||||| ||||||    
T  44091957 tcacttataaagtgttcaacctttacttttacatctgatgtgtgacata 44091909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 11977429 - 11977378
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||| |||| | |||||| |||||||||||||||    
T  11977429 ccacatcgaggctagaacaaccgcacttgcaagagagacatcacactcttac 11977378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 22077592 - 22077643
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||| ||||||||||||| ||||| |||  ||||||||||||||||||    
T  22077592 acttataaggtgttcaacctttacttttctatccgatgtgagacatataact 22077643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 41184522 - 41184573
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||||||||||||||||| || || |||  ||||||||||||||||||    
T  41184522 acttataaagtgttcaacctttactattttatccgatgtgagacatataact 41184573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 22793341 - 22793288
Alignment:
Q  213 tcacttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    ||||||||||||| |||||||| | ||||| |||| |||||| |||||||||||    
T  22793341 tcacttataaagttttcaacctctacttttctatacgatgtgggacatataact 22793288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 39066210 - 39066259
Alignment:
Q  140 cacatccaggctagaacaaccacactagtaagagacacatcacactctta 189  Q
    |||||| |||||||||||||||||  ||||||||| ||| ||||||||||    
T  39066210 cacatcaaggctagaacaaccacataagtaagagagacaccacactctta 39066259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 24131999 - 24132043
Alignment:
Q  141 acatccaggctagaacaaccacactagtaagagacacatcacact 185  Q
    ||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  24131999 acatcgaggctagaacaaccacactagtgagagagacaccacact 24132043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 24600323 - 24600375
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttaca 191  Q
    ||||||| ||||||||||||||| |||||  ||||| ||| ||||||||||||    
T  24600323 ccacatcgaggctagaacaaccatactagcgagagagacaccacactcttaca 24600375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 41157141 - 41157089
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| |||||||||||||||||| || || ||| ||| |||||||||||    
T  41157141 cccacatcgaggctagaacaaccacacaagcaatagagacaccacactcttac 41157089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 34835025 - 34834974
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| ||| |||||||||||    
T  34835025 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttac 34834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 45122067 - 45122117
Alignment:
Q  140 cacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||| |||||||||||||| ||| ||||||||| ||| |||||||||||    
T  45122067 cacatcgaggctagaacaaccccacaagtaagagagacaccacactcttac 45122117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 40518641 - 40518592
Alignment:
Q  217 ttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||| ||||||||||||| ||||| ||| ||||||| |||||||||||    
T  40518641 ttataaggtgttcaacctttacttttctatctgatgtgggacatataact 40518592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 41972221 - 41972168
Alignment:
Q  213 tcacttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||||| ||||||||||||| ||||| |||  |||||| |||||||||||    
T  41972221 tcacttataaggtgttcaacctttacttttctatccgatgtgggacatataact 41972168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 33113387 - 33113427
Alignment:
Q  150 ctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||||||||||||| |||||| ||| |||||||||||    
T  33113387 ctagaacaaccacactagcaagagagacaccacactcttac 33113427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 623879 - 623828
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||| ||||||||||||||||| || ||||||  ||||||||||||||||||    
T  623879 acttgtaaagtgttcaacctttactattatatccgatgtgagacatataact 623828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 3295354 - 3295405
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| |||||||||||||||||| || |||||| ||| |||||||||||    
T  3295354 ccacatcgaggctagaacaaccacacaagcaagagagacaacacactcttac 3295405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 9498751 - 9498802
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||| ||||||||||||| || || ||| |||||||||||||||||||    
T  9498751 acttataaggtgttcaacctttactattctatctgatgtgagacatataact 9498802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 35167847 - 35167898
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    ||||||| | ||||||||||||||||||||  |||| |||||||||||||||    
T  35167847 ccacatcgatgctagaacaaccacactagtgtgagagacatcacactcttac 35167898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 41632843 - 41632792
Alignment:
Q  215 acttataaagtgttcaaccttttcttttatatatgatgtgagacatataact 266  Q
    |||||||| ||||||||||||| ||||| |||  ||||||||||||||||||    
T  41632843 acttataaggtgttcaacctttacttttctatccgatgtgagacatataact 41632792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 36492226 - 36492276
Alignment:
Q  139 ccacatccaggctagaacaaccacactagtaagagacacatcacactctta 189  Q
    ||||||| |||||||||||||||||| || |||||| ||| ||||||||||    
T  36492226 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactctta 36492276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 26074154 - 26074206
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| ||| |||| ||||||||||||| ||||| ||| |||||||||||    
T  26074154 cccacatcgaggttagagcaaccacactagtgagagagacaccacactcttac 26074206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 26074762 - 26074710
Alignment:
Q  138 cccacatccaggctagaacaaccacactagtaagagacacatcacactcttac 190  Q
    |||||||| ||| |||| ||||||||||||| ||||| ||| |||||||||||    
T  26074762 cccacatcgaggttagagcaaccacactagtgagagagacaccacactcttac 26074710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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