View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_41 (Length: 277)
Name: NF15081_low_41
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 48702629 - 48702385
Alignment:
| Q |
16 |
atgaggaagtgcatgccatcatgggaccaataacaacaatggaagcaaattttgtgattcaactaggagacaaagctcacgtacccattgtaacattttc |
115 |
Q |
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| T |
48702629 |
atgaggaagtgcatgccatcatgggaccaataacaacaatggaagcaaattttgtgattcaactaggagacaaagctcacgtgcccattgtaacattttc |
48702530 |
T |
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| Q |
116 |
agcaacaagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaactgattcagctcaagctaaagcaatcacctcaattatccaa |
215 |
Q |
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| T |
48702529 |
agcaacaagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaaatgattcaactcaagttaaagcaatcacctcaattatccaa |
48702430 |
T |
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| Q |
216 |
gcttttggatggaaacaagtggttcccatttatgtagacaatagt |
260 |
Q |
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| T |
48702429 |
gcttttggatggaaacaagtggttcccatttatgtagacaatagt |
48702385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 48714729 - 48714491
Alignment:
| Q |
22 |
aagtgcatgccatcatgggaccaataacaacaatggaagcaaattttgtgattcaactaggagacaaagctcacgtacccattgtaacattttcagcaac |
121 |
Q |
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| T |
48714729 |
aagtgcaagccataatggggccaataacaacaatagaaacaaatttcgtgattcaactaggagacaaagctcacgtgcccattgtaacattttcagcaac |
48714630 |
T |
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| Q |
122 |
aagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaactgattcagctcaagctaaagcaatcacctcaattatccaagctttt |
221 |
Q |
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| T |
48714629 |
aagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaaatgattcaactcaagttaaagcaatcacctcaattatccaagctttt |
48714530 |
T |
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| Q |
222 |
ggatggaaacaagtggttcccatttatgtagacaatagt |
260 |
Q |
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| T |
48714529 |
ggatggaaacaagtggttcccatttatgtagacaatagt |
48714491 |
T |
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