View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_42 (Length: 265)
Name: NF15081_low_42
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 26412940 - 26413190
Alignment:
| Q |
1 |
tgactttgtattttactattaatgtgacgcgtgtaacggatttgcttaacttaaaatgtatatttaaaacttgattacatttttcaagaattgttataat |
100 |
Q |
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| T |
26412940 |
tgactttgtattttactattaatgtgacgcgtgtaacggattcgcttaacttaaaatgtttatttaaaacttgatgacattttt-aagaattgttataat |
26413038 |
T |
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| Q |
101 |
caagaaaggaacaacaagtactattacaaagacttgcaataatgagattcaaacaatacatagagcttttgtatgaggagatgtggatgaa---aagaag |
197 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26413039 |
caagaatggaacaacaagtactattacaaagacatgcaataatgagattcaaacaatacatagagcttttgtatgaggagatgtggatgaaaagaagaag |
26413138 |
T |
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| Q |
198 |
tttcatgctatgaaaagggaaacaattatacaacctaaagaaattggaggtt |
249 |
Q |
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| T |
26413139 |
tttcatgctatgaaaagggaaacaattatacaacctaaagaaattggaggtt |
26413190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 43624878 - 43624926
Alignment:
| Q |
198 |
tttcatgctatgaaaagggaaacaattatacaacctaaagaaattggag |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43624878 |
tttcatgctatgaaaagggaaacaattatacaacctaaagaaattggag |
43624926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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