View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_45 (Length: 252)
Name: NF15081_low_45
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 53447235 - 53447015
Alignment:
| Q |
14 |
agatatgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaagctattgatcatgtttgtaacaatttcttgtctaggttctagca |
113 |
Q |
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| T |
53447235 |
agatatgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaagctcttgatcatgtttgtaacaatttcttgtctaggttctagca |
53447136 |
T |
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| Q |
114 |
aagaagaagaagaagtcgaacaggagttagagtgtgatgatctcatgcttgtgttttcaattccatatccttgagctttgttgcatatgtcaacataaga |
213 |
Q |
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| T |
53447135 |
aagaagaagaagaagtcgaacaggagttagagtgtgatgatctcatgcttgtgttttcaattccatatccttgagctttgttacatatgtcaacataaga |
53447036 |
T |
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| Q |
214 |
ctttgttctgaatgcattgcg |
234 |
Q |
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| T |
53447035 |
ctttgttctgaatgcattgcg |
53447015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 8357696 - 8357645
Alignment:
| Q |
18 |
atgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaa |
69 |
Q |
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| T |
8357696 |
atgcttctaagctagcttcgaaatagtcaactagaagatgatgcaccttaaa |
8357645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 8357505 - 8357465
Alignment:
| Q |
188 |
gctttgttgcatatgtcaacataagactttgttctgaatgc |
228 |
Q |
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| T |
8357505 |
gctttgttgcatatttcaatataagactttgttctaaatgc |
8357465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 28594080 - 28594125
Alignment:
| Q |
182 |
ccttgagctttgttgcatatgtcaacataagactttgttctgaatg |
227 |
Q |
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||||| |||||||||||||| |||| ||||||||||||||| |||| |
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| T |
28594080 |
ccttgtgctttgttgcatatttcaatataagactttgttctaaatg |
28594125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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