View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15081_low_46 (Length: 251)

Name: NF15081_low_46
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15081_low_46
NF15081_low_46
[»] chr8 (3 HSPs)
chr8 (16-145)||(26948183-26948312)
chr8 (142-218)||(26947295-26947371)
chr8 (142-218)||(26949618-26949694)
[»] chr7 (2 HSPs)
chr7 (142-218)||(5985197-5985273)
chr7 (142-218)||(8541876-8541952)
[»] scaffold0373 (1 HSPs)
scaffold0373 (142-214)||(14991-15063)
[»] chr4 (1 HSPs)
chr4 (142-214)||(6825210-6825282)
[»] chr6 (1 HSPs)
chr6 (139-218)||(13465288-13465367)
[»] chr5 (2 HSPs)
chr5 (70-130)||(20508014-20508074)
chr5 (142-186)||(20577379-20577423)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 26948312 - 26948183
Alignment:
Q  16 caatcacatggccaaagatgagagaatcttcaaggatatcgattactctgtcaaagtaaaggttcgactgggaaacgactcagtcgtggaatctaaaggc 115  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26948312 caatcacatggccaaagatgagagcatcttcaaggatattgattactttgtcaaagtaaaggttcgactgggaaacgactcagtcatggaatctaaaggc 26948213  T
Q  116 aaaggcactgtgatggtggaaactaagaaa 145  Q
    |||||| |||||||||||||||||||||||    
T  26948212 aaaggccctgtgatggtggaaactaagaaa 26948183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 26947371 - 26947295
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26947371 gaaatgtcatgaagaatctagaaagaaatatctagaacatgacatccacactataaataggcaagcatgtactcatt 26947295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 26949694 - 26949618
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 218  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949694 gaaatggcatgaagaatctaaaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 26949618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 5985273 - 5985197
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5985273 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactttaaataggcaagcatgtactcatt 5985197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 8541876 - 8541952
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 218  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8541876 gaaatgtcatgaagaatctagaaagaactatatagaacatgacatccacactataaataggcaagcatgtactcatt 8541952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 15063 - 14991
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtact 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15063 gaaatgtcatgaagaatctagaaagaactatctagaatatgacatccacactataaataggcaagcatgtact 14991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 6825210 - 6825282
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtact 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6825210 gaaatgtcatgaagaatctagaaagaactatctagaatatgacatccacactataaataggcaagcatgtact 6825282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 13465367 - 13465288
Alignment:
Q  139 taagaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 218  Q
    ||||||||||||||||||||||||||||||   ||||||| |||| ||  ||||||||||||||||| ||||||||||||    
T  13465367 taagaaatgtcatgaagaatctagaaagaagcctctagaatatgatatttacactataaataggcaaacatgtactcatt 13465288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 20508074 - 20508014
Alignment:
Q  70 agtaaaggttcgactgggaaacgactcagtcgtggaatctaaaggcaaaggcactgtgatg 130  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  20508074 agtaaaggttcgactaggaaatgactcagtcgttgaatctaaaggcaaaggcactatgatg 20508014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 20577379 - 20577423
Alignment:
Q  142 gaaatgtcatgaagaatctagaaagaactatctagaacatgacat 186  Q
    |||||||||||| ||| |||||||||||||||||||  |||||||    
T  20577379 gaaatgtcatgacgaacctagaaagaactatctagattatgacat 20577423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University