View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_48 (Length: 242)
Name: NF15081_low_48
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 13887090 - 13887304
Alignment:
| Q |
10 |
agaagcaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887090 |
agaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
13887189 |
T |
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| Q |
110 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887190 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
13887289 |
T |
|
| Q |
210 |
gatccttcttgtttg |
224 |
Q |
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||||||||||||||| |
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| T |
13887290 |
gatccttcttgtttg |
13887304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 13898114 - 13897909
Alignment:
| Q |
10 |
agaagcaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
109 |
Q |
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|||| |||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||| | | ||| | ||||||||||||||||||||||||||||| |
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| T |
13898114 |
agaaacaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattaagtcaatttttgagcttgtgaacaataggctcatacc |
13898015 |
T |
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| Q |
110 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
209 |
Q |
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| T |
13898014 |
tgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgtt |
13897915 |
T |
|
| Q |
210 |
gatcct |
215 |
Q |
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|||||| |
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| T |
13897914 |
gatcct |
13897909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 1035171 - 1034966
Alignment:
| Q |
10 |
agaagcaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
109 |
Q |
| |
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|||| |||||||||| ||| ||||||||||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||||||||||||||| |
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| T |
1035171 |
agaaacaaaggaaaatagctagtatcgagtttcattcgacaaattttagaaagttaacaaatgagtcaatttttgagcttgtgaacaataggctcatacc |
1035072 |
T |
|
| Q |
110 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
209 |
Q |
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|||||||| | ||| ||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1035071 |
agtcttagaattatcattgaagaaaaatgttgccatagatcttcaagatattttgctgagactaacttttgataatgtttgtatgatagcttttggtgtt |
1034972 |
T |
|
| Q |
210 |
gatcct |
215 |
Q |
| |
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|||||| |
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| T |
1034971 |
gatcct |
1034966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 28667446 - 28667237
Alignment:
| Q |
15 |
caaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacctgtct |
114 |
Q |
| |
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||||| ||||||||||| |||||||||||||| || ||||| || || |||||||||||||| |||||||||||||| | ||||| ||||||| | |
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| T |
28667446 |
caaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaactgattctttgtttgagcttgttcattcaaggcttttacctgttt |
28667347 |
T |
|
| Q |
115 |
tagattcatc-gttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgttgatc |
213 |
Q |
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||||| ||| ||||| ||| | | || | ||||||||||| ||| | || |||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
28667346 |
tagatgaatcagttgataaaagggctgtc-acagatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttttggtgttgatc |
28667248 |
T |
|
| Q |
214 |
cttcttgtttg |
224 |
Q |
| |
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|| ||||||| |
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|
| T |
28667247 |
ctggttgtttg |
28667237 |
T |
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