View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_50 (Length: 240)
Name: NF15081_low_50
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20140726 - 20140949
Alignment:
| Q |
1 |
atcatcacgaaattgtcttgctagtaacttacttccttgttctctactaagagtccattttcctgtggctaaatgtgaactcaatgacccattaaccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20140726 |
atcatcacgaaattgtcttgctagtaacttacttccttgttctctactaagagtccattttcctgtagctaaatgtgaactcaatgacccattaaccttt |
20140825 |
T |
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| Q |
101 |
ctcttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140826 |
ctcttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaat |
20140925 |
T |
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| Q |
201 |
ctgcgtagagtgtatcatgataaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
20140926 |
ctgcgtagagtgtatcatgataaa |
20140949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44318141 - 44318364
Alignment:
| Q |
1 |
atcatcacgaaattgtcttgctagtaacttacttccttgttctctactaagagtccattttcctgtggctaaatgtgaactcaatgacccattaaccttt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44318141 |
atcatcacgaaattgtcttgctagtaacttacttccttgttctctactaagagtccattttcctgtagctaaatgtgaactcaatgacccattaaccttt |
44318240 |
T |
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| Q |
101 |
ctcttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318241 |
ctcttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaat |
44318340 |
T |
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| Q |
201 |
ctgcgtagagtgtatcatgataaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
44318341 |
ctgcgtagagtgtatcatgataaa |
44318364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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