View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_52 (Length: 239)
Name: NF15081_low_52
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 33485109 - 33484887
Alignment:
| Q |
4 |
caaagggactaatcattgtaaatgatccaagtttgacattgtattcgggcctggtccctacctacggtaacaagaaggatccaagtttaagaaccctagg |
103 |
Q |
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| T |
33485109 |
caaagagactaatcattgtaaatgatccaagtttgacattgtattcgggcctggtccctaactacggtaacaagaaggatccaagtttaagaaccctagg |
33485010 |
T |
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| Q |
104 |
ggatctagtgcatcaaaaacttgag---nnnnnnnnnnnnnnnaagaaacatgacatgcaagtattatcttcgaactgattgaagatgaaaatgaattta |
200 |
Q |
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| T |
33485009 |
ggatctagtgcatgaaaaacttgagttttttttttttttttttaagaaacatgacatgcaagtattatcttcgaactgattgaagatgaaaatgaattta |
33484910 |
T |
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| Q |
201 |
ccttagaaggaagttcaggaagc |
223 |
Q |
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| T |
33484909 |
ccttagaaggaagttcaggaagc |
33484887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 33497470 - 33497402
Alignment:
| Q |
155 |
catgcaagtattatcttcgaactgattgaagatgaaaatgaatttaccttagaaggaagttcaggaagc |
223 |
Q |
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| T |
33497470 |
catgcaagtattatctatgaactgattgaagatgaaaatgaatttaccttagaaggaagttcaggaagc |
33497402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 33497876 - 33497785
Alignment:
| Q |
11 |
actaatcattgtaaatgatccaagtttgacattgtattcgggcctggtccctacctacggtaacaagaaggatccaagtttaagaaccctag |
102 |
Q |
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||||||||| ||||| |||||| |||||||||||||| |||||| | |||||| ||| |||||||||||||||| || |||||||||||||| |
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| T |
33497876 |
actaatcatagtaaacgatccatgtttgacattgtatacgggccagatccctatctatggtaacaagaaggatcgaattttaagaaccctag |
33497785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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