View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_7 (Length: 551)
Name: NF15081_low_7
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_7 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Complemental strand, 6374702 - 6374167
Alignment:
| Q |
13 |
agcaaaggggatactatatctcatctatgtgctctctttgtttatcaaatgttgaaaactcattcgacatgttctttaaatgtaagtttgttttcatgat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||||||||||| |
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| T |
6374702 |
agcaaaggggatgctatatctcatctatgtgctctctttgtttatctaatgttgaaaactcattccacttgttctttgaatgtaagtttgttttcatgat |
6374603 |
T |
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| Q |
113 |
ttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccatttatgatagaggctggtcacctcagtgcaaa |
211 |
Q |
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| T |
6374602 |
ttggtgctggtttgcttccattcttgattctacactgcattttcaatcaattgaggacatttggaccatttgtgatagaggatggtcacctcagtgcaaa |
6374503 |
T |
|
| Q |
212 |
actgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagatttcaagactgtaaacctaattggca---ttca- |
307 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
6374502 |
actgtgatacatgccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagatttcaagactgtaaacctaattggcagcttgcaa |
6374403 |
T |
|
| Q |
308 |
-------------atctgcagtcaatctttcagtgaacaatacttccaaggtttccaattcatctgtcagagatttagtcaccttaaagaaatttgatgt |
394 |
Q |
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| T |
6374402 |
ttaacaacatcatatctgcagtcaatctttcagggaacaacacttccaaggtttccaattcatctgtcagagatttagtcaccttaaagaaatttgatgt |
6374303 |
T |
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| Q |
395 |
catcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatggagcagctaattca |
494 |
Q |
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| T |
6374302 |
catcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatggagcagctaattca |
6374203 |
T |
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| Q |
495 |
agtacctcagcttgtggaggaatttttagggattgc |
530 |
Q |
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| T |
6374202 |
actacctcagcttgtggaggaatttttagggattgc |
6374167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 285
Target Start/End: Original strand, 16092 - 16280
Alignment:
| Q |
98 |
gtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccatttatgatagaggctgg |
196 |
Q |
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| T |
16092 |
gtttgctttcatgatttggtgctggttttcctcaatccttgattcaactttacattttcaatctattgaggaaatatggaccatttgtgatagatgttgg |
16191 |
T |
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| Q |
197 |
tcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagatttcaaga |
285 |
Q |
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| T |
16192 |
tcaccacagtgcaaaacagtaattaaagcctctattgttaatattttcagcacaatatggtacgctagaaaccaatgcagatttcaaga |
16280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 487
Target Start/End: Original strand, 28716525 - 28716631
Alignment:
| Q |
381 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
480 |
Q |
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| T |
28716525 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaggttatttggtccccaccctactcaggatggatcaaatgcaacactgacg |
28716624 |
T |
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| Q |
481 |
gagcagc |
487 |
Q |
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| T |
28716625 |
gtgcagc |
28716631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 280
Target Start/End: Original strand, 28716210 - 28716407
Alignment:
| Q |
84 |
ttctttaaatgtaagtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccattt |
182 |
Q |
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|||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| | | || ||||| || || ||| |||| || ||||| |||| |
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| T |
28716210 |
ttctttgaatgtaagttttctttcatgatatggtgttggtttgcttctattcttgacacatctcttcatttccagtctattgaggatatctggactattt |
28716309 |
T |
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| Q |
183 |
atgatagaggctggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagattt |
280 |
Q |
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| T |
28716310 |
gtgatcgtcagtggtctccacagtgtaaaatagtgattcaagccactattgttaatatcttcagtacaatttggtactcaaggaatcaatgtagattt |
28716407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 487
Target Start/End: Original strand, 16490157 - 16490263
Alignment:
| Q |
381 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
480 |
Q |
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||||| ||| ||||||| || ||| ||||||||||||||||||| ||||||||||||||||| || || ||||||| |||||| || || |||||||| | |
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| T |
16490157 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaagttatttggtccccaccatactcaggatggatcaaatgcaacactgacg |
16490256 |
T |
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| Q |
481 |
gagcagc |
487 |
Q |
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| T |
16490257 |
gtgcagc |
16490263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 280
Target Start/End: Original strand, 16489842 - 16490039
Alignment:
| Q |
84 |
ttctttaaatgtaagtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccattt |
182 |
Q |
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|||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| | | || ||||| ||||| ||| |||| || ||||| |||| |
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| T |
16489842 |
ttctttgaatgtaagttttctttcatgatatggtgttggtttgcttctattcttgacacatctcttcatttccaatctattgaggatatctggactattt |
16489941 |
T |
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| Q |
183 |
atgatagaggctggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagattt |
280 |
Q |
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| T |
16489942 |
gtgatcgtcagtggtctccacagtgtaaaatagtgattcaagccactattgttaatatcttcagaacaatttggtactcaaggaatcaatgtagattt |
16490039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 24454160 - 24454108
Alignment:
| Q |
474 |
actgatggagcagctaattcaagtacctcagcttgtggaggaatttttaggga |
526 |
Q |
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| T |
24454160 |
actgatggagcagctacttcaattacttcagcctgtggagggatatttaggga |
24454108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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