View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15081_low_9 (Length: 549)
Name: NF15081_low_9
Description: NF15081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15081_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 26663502 - 26662991
Alignment:
| Q |
19 |
ggaataaccctgaaattttgaaggttaggctatgtattgtactatacttaccttcttattgttgatcaggtgatctactgtatcaaatttattacatgct |
118 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
26663502 |
ggaataaccctgaaattttgaaggttgggctatgtattgtactatacttaccttcttattgttcatcaggtgatctactatatcaaatttattaaatgct |
26663403 |
T |
|
| Q |
119 |
aactgttaattatatgcggcggtacattctgcagataattaacttacatgctaagccaccatgcccaatggtaatttgttgtctgattctcatatttgcc |
218 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26663402 |
aactgttaattatatgcggcggtacattttacagataattaacttacatgctaagccaccatgcccaatggtaatttgttgtctgattctcatatttgcc |
26663303 |
T |
|
| Q |
219 |
tgaagccttgatctgagtggagcgtgttttgattccttttcctttttcagtgtccttttaatcttatgacttgattgattatgtctcttcttcttgttnn |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26663302 |
tgaagccttgatctgagtggagcgtgttttgattccttttcc-ttttcagtgtccttttaatcttatgacttgattgattatgtctcttcttcttgttaa |
26663204 |
T |
|
| Q |
319 |
nnnnngaaagattatgtcacttctttcttgcaggtaaaaggcagcgatacatcgacagctgaatcgagttctgaagctgaagataatgttatagctgttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26663203 |
aaaaagaaagattatgtcacttctttcttgcaggtaaaaggcagcgatacattgacagctgaatcgagttctgaagctgaagataatgttatagctgttt |
26663104 |
T |
|
| Q |
419 |
gcgaggaggtaaatgttgtccttaggttgccatacatttatttgattgactgtaggaatttgttgtttataagtttagttagttaggttgttaagtttct |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26663103 |
gcgaggaggtaaatgttgtccttaggttgccatacatttatttgattgactgtaggtatttgttgtttataagtttagttagttaggttgttaagtttct |
26663004 |
T |
|
| Q |
519 |
gtattagtccctt |
531 |
Q |
| |
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||||| ||||||| |
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| T |
26663003 |
gtattggtccctt |
26662991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 327 - 465
Target Start/End: Complemental strand, 26657069 - 26656931
Alignment:
| Q |
327 |
agattatgtcacttctttcttgcaggtaaaaggcagcgatacatcgacagctgaatcgagttctgaagctgaagataatgttatagctgtttgcgaggag |
426 |
Q |
| |
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||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||| |
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| T |
26657069 |
agattatgttacttttttcttgcaggtaaaaggcattgatacatcgacagctgaatcgagttctgaagttgaagataatgatatagctatttccgaggag |
26656970 |
T |
|
| Q |
427 |
gtaaatgttgtccttaggttgccatacatttatttgatt |
465 |
Q |
| |
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|||| |||||| |||||||||||||| ||||| |||||| |
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| T |
26656969 |
gtaagtgttgttcttaggttgccataaatttaattgatt |
26656931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 26657393 - 26657275
Alignment:
| Q |
19 |
ggaataaccctgaaattttgaaggttaggctatgtattgtactatacttaccttcttattgttgatcaggtgatctactgtatcaaatttattacatgct |
118 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||| |||| || ||||| |||||| |||||| ||||| ||||||||| |||||||||| ||||||||| |
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| T |
26657393 |
ggaaaaacccggaaattttgaaggttaggttatgtgttgtgctgtacttgccttctgattgttcatcagatgatctactatatcaaatttgttacatgct |
26657294 |
T |
|
| Q |
119 |
aactgttaattatatgcgg |
137 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
26657293 |
aactgttaattgtatgcgg |
26657275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 26670134 - 26670060
Alignment:
| Q |
327 |
agattatgtcacttctttcttgcaggtaaaaggcagcgatacatcgacagctgaatcgagttctgaagctgaaga |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| |
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|
| T |
26670134 |
agattatgtcacttctttcttgcaggtaaaaggcagtgatacatccacagctgaatcgggctctgaagctgaaga |
26670060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 26670254 - 26670118
Alignment:
| Q |
166 |
atgctaagccaccatgcccaatggtaatttgttgtctgattctcatatttgcctgaagccttgatctgagtggagcgtgttttgattccttttccttttt |
265 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||||||| || || || || ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
26670254 |
atgccaagccacgatgcccaatggtaatttcttgtctgattttcttaatt---tg----cttgaactgagtggagcctgttttgattccttttcctttt- |
26670163 |
T |
|
| Q |
266 |
cagtgtccttttaatcttatgacttgattgattatgtctcttctt |
310 |
Q |
| |
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||| |||||||| ||||||||||||||| ||||||||| |||||| |
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| T |
26670162 |
cagcgtccttttcatcttatgacttgatagattatgtcacttctt |
26670118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 26642655 - 26642536
Alignment:
| Q |
19 |
ggaataaccctgaaattttgaaggttaggctatgtattgtactatacttaccttcttattgttgatcaggtgatctactgtatcaaa-tttattacatgc |
117 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||| |||| || ||||| |||||| ||| || ||| | ||||||||| ||||||| || |||||||| |
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| T |
26642655 |
ggaaaaacccagaaattttgaaggttaggttatgtgttgtgctgtacttgccttctgatttttcatcggatgatctactatatcaaagcttgttacatgc |
26642556 |
T |
|
| Q |
118 |
taactgttaattatatgcgg |
137 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
26642555 |
taactgttaattgtatgcgg |
26642536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 26657191 - 26657061
Alignment:
| Q |
164 |
acatgctaagccaccatgcccaatggtaatttgttgtctgattctcat-atttgcctgaagccttgatctgagtggagcgtgttttgattccttttcctt |
262 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| || || |||| ||||| |||| ||||||||||| ||||| ||||| | ||||| |
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| T |
26657191 |
acatgctaagccacgatgcccaatggtaatttgttgtatggttttcattatttggttgaa--------ctgagtggagcctgtttcgattcatgttcctc |
26657100 |
T |
|
| Q |
263 |
tttcagtgtccttttaatcttatgacttgattgattatgt |
302 |
Q |
| |
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|| ||||||||||||||||||| |||||||| |||||||| |
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|
| T |
26657099 |
tt-cagtgtccttttaatcttacgacttgatagattatgt |
26657061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 26642372 - 26642296
Alignment:
| Q |
327 |
agattatgtcacttctttcttgcaggtaaaaggcagcgatacatcgacagctgaatcgagttctgaagctgaagata |
403 |
Q |
| |
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|||||||| |||||||| | |||||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |
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| T |
26642372 |
agattatggcacttcttccgtgcaggtaaaagacattgatacatccacagctgagtcgaggtctgaagctgaagata |
26642296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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