View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15082_high_3 (Length: 249)
Name: NF15082_high_3
Description: NF15082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15082_high_3 |
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| [»] scaffold0178 (2 HSPs) |
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Alignment Details
Target: scaffold0178 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 19117 - 19228
Alignment:
| Q |
37 |
aggaggcaagtgtgttgtttcagatacaagagagtaataagattgnnnnnnn-ctaagtttttaatctcagccctttgtttaatttatttcacatgtcac |
135 |
Q |
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| T |
19117 |
aggaggcaagtgtcttgttttagatacaagagagtaataagattgttttttttctaagtttttaatctcagccctttgtttaatttattacacatgtcac |
19216 |
T |
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| Q |
136 |
acatccacgatg |
147 |
Q |
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||||||| |||| |
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| T |
19217 |
acatccatgatg |
19228 |
T |
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Target: scaffold0178; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 18626 - 18514
Alignment:
| Q |
48 |
gtgttgtttcagatacaagagagtaataagattgnnnnnnnctaagtttttaatctcagccctttgtttaatttatttcacatgtcacacatccacgatg |
147 |
Q |
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| T |
18626 |
gtgttgtttcagctacaagagagtaacaagtttgtttttt-ctaaggttttaatctcagccctttgtttaatttattccacatgtcacacatccatgatg |
18528 |
T |
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| Q |
148 |
ataaatggtgtaaa |
161 |
Q |
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| T |
18527 |
gtaaatggtgtaaa |
18514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 41282790 - 41282659
Alignment:
| Q |
37 |
aggaggcaagtgtgttgtttcagatacaagagagtaataagattgnnnnnnnctaagtttttaatctcagccctttgtttaatttatttcacatgtcaca |
136 |
Q |
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| T |
41282790 |
aggaggcaaatgtgttgtttcagatacaagaaagtaataagattgtttttttctatgtttttaatctcaatcctttgttcaatttattccacatatcaca |
41282691 |
T |
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| Q |
137 |
catccacgatgataaatggtgtaaaaggagca |
168 |
Q |
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| T |
41282690 |
catctatgatggtaaatggtgtaaatggagca |
41282659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 41282879 - 41282991
Alignment:
| Q |
48 |
gtgttgtttcagatacaagagagtaataagattgnnnnnnnctaagtttttaatctcagccctttgtttaatttatttcacatgtcacacatccacgatg |
147 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |
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| T |
41282879 |
gtgttgtttcagatacaagagagtaacaagtttgtttttt-ctaaggttttaatctcaaccctttgtttaatttattccacatgtcacacatccatgatg |
41282977 |
T |
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| Q |
148 |
ataaatggtgtaaa |
161 |
Q |
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|||||| |||||| |
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| T |
41282978 |
gtaaatgatgtaaa |
41282991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 40155586 - 40155529
Alignment:
| Q |
179 |
cgaaaataacatacaatacaacctatgataaaaattactctagtttcaatagaataat |
236 |
Q |
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| T |
40155586 |
cgaaaataacatacaatacaacctatgataaaaattactctagtttcaatagaataat |
40155529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 48204973 - 48205015
Alignment:
| Q |
126 |
cacatgtcacacatccacgatgataaatggtgtaaaaggagca |
168 |
Q |
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| T |
48204973 |
cacatgtcacacatccatgatggtaaatggtgtaaatggagca |
48205015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 31600516 - 31600474
Alignment:
| Q |
126 |
cacatgtcacacatccacgatgataaatggtgtaaaaggagca |
168 |
Q |
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| T |
31600516 |
cacatgtcacacatccatgatgataaatggggtaaatggagca |
31600474 |
T |
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