View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15082_low_1 (Length: 390)
Name: NF15082_low_1
Description: NF15082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15082_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 17779514 - 17779157
Alignment:
| Q |
20 |
aacattataaggtaccttaaccaatgcattattatcatattggtaattaccaaatggtaatgagtagtcactaaattgctcttgcaacccaccattcatg |
119 |
Q |
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| T |
17779514 |
aacattataaggtaccttaaccaatgcattattatcatattggtaattaccaaatggtaatgagtagtcactaaattgctcttgcaacccaccattcatg |
17779415 |
T |
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| Q |
120 |
aaatttgtagttgtaacctcatcacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtag |
219 |
Q |
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| T |
17779414 |
aaatttgtagttgtaacctcatcacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtag |
17779315 |
T |
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| Q |
220 |
atttggtaataatatcactattagtgttagatgtttcaagtggagatgatgatgagaatatcaagtttgtattaagatcttcatgtagtaatggactaat |
319 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17779314 |
atttggaaataatatcactattagtgttagatgtttcaagtggagatgatgatgagaatatcaagcttgtattaagatcttcatgtagtaatggactaat |
17779215 |
T |
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| Q |
320 |
aatggatttataaggggtaacatctacatcaaaattttggctatcattgttgttagtg |
377 |
Q |
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| T |
17779214 |
aatggatttataaggggtaacatcttcatcaaaattttggctatcattgttgttagtg |
17779157 |
T |
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