View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15082_low_2 (Length: 315)
Name: NF15082_low_2
Description: NF15082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15082_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 53251149 - 53251350
Alignment:
| Q |
100 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251149 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
53251248 |
T |
|
| Q |
200 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251249 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
53251348 |
T |
|
| Q |
300 |
cc |
301 |
Q |
| |
|
|| |
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| T |
53251349 |
cc |
53251350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 53236731 - 53236932
Alignment:
| Q |
100 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53236731 |
gctggtttccttttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggagaacagttttagttgctttcattatttcttcaacagatc |
53236830 |
T |
|
| Q |
200 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
53236831 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcaatctcttctttagt |
53236930 |
T |
|
| Q |
300 |
cc |
301 |
Q |
| |
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|| |
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| T |
53236931 |
cc |
53236932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 103 - 301
Target Start/End: Original strand, 44740818 - 44741016
Alignment:
| Q |
103 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatcttc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
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| T |
44740818 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggagaagaacggttttagttgctttcattatttcttcaacagatcttc |
44740917 |
T |
|
| Q |
203 |
cagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagtcc |
301 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44740918 |
cagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcgatctcttctttagtcc |
44741016 |
T |
|
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