View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15083_low_2 (Length: 284)
Name: NF15083_low_2
Description: NF15083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15083_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 4525696 - 4525444
Alignment:
| Q |
16 |
tgtgggtataggaaattgatattggtnnnnnnntgtaacagtcatatacaacctcagtaaactaatgagaaacatgagaaacatggtatgtgcacattaa |
115 |
Q |
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| T |
4525696 |
tgtgggtataggaaattaatattggtaaaaaaatgtaacagtcatgtacaaactcagtaaactaatgagaaacatgagaaacatggtatgtgcacattaa |
4525597 |
T |
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| Q |
116 |
tcaaataattagaataaggaaaatacttgtgtttcacgagaagtttgagccaacaaagcatcaagtttcccctttcttgtagtactatcacccgttgtac |
215 |
Q |
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| T |
4525596 |
tcaaataattagaataaggaaaatacttgtgtttcatgagaagtttgagccaacaaagcatcaagtttcccctttcttgtagtactatcacccgttgtac |
4525497 |
T |
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| Q |
216 |
taactccattaatagatctagcagcaacaatgaaaccatcataagtataaaat |
268 |
Q |
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| T |
4525496 |
taactccattaatagatctagcagcaacaatgaaaccatcatatgtataaaat |
4525444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 4533890 - 4533736
Alignment:
| Q |
113 |
taatcaaataattagaataaggaaaatacttgtgtttcacgagaagtttgagccaacaaagcatcaagtttcccctttcttgtagtactatcacccgttg |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| || | |
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| T |
4533890 |
taatcaaataattagaataaggaatatacttgtgtttccagagaagtttgagccaacaaagcagcaagtttcctctttcttgtagtatcatcacaagtag |
4533791 |
T |
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| Q |
213 |
tactaactccattaatagatctagcagcaacaatgaaaccatcataagtataaaa |
267 |
Q |
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| T |
4533790 |
tactaaattcattaatagatctagtggcaacaatgaaaccatcatatgtataaaa |
4533736 |
T |
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