View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15083_low_3 (Length: 273)
Name: NF15083_low_3
Description: NF15083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15083_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 4525726 - 4525953
Alignment:
| Q |
50 |
ggaaaagagcatgccataaaatata------ttaaggagcggtaccctttcaatgtcatgaatttcgtcagtatcaatgtatcataagaaaaaaggag-- |
141 |
Q |
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| T |
4525726 |
ggaaaagagaatgccataaaatatactactattaaggagcggtaccctttcaatgtcatgaatttcgtcagtatcaatgtatcataggaaaaaaggaggg |
4525825 |
T |
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| Q |
142 |
---aagctcaaaagaacatgagagcggtccaatcctaatgtttttagtctttcttcctctcttcttttcctccgcatgtataagttatcccatcacatat |
238 |
Q |
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| T |
4525826 |
aggaagctcaaaagaacatgagatcggtccaatcctaatgtttttagtctttcttcctctcttcttttcctccgcatgtataagttataccatcacatat |
4525925 |
T |
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| Q |
239 |
tataatacgaggaaaaatataagaaata |
266 |
Q |
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| T |
4525926 |
tataatatgagggaaaatataagaaata |
4525953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 264
Target Start/End: Complemental strand, 4293059 - 4292846
Alignment:
| Q |
50 |
ggaaaagagcatgccataaaatatattaaggagcggtaccctttcaatgtcatgaatttcgtcagtatcaatgtatcataagaaaaaaggagaagctcaa |
149 |
Q |
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| T |
4293059 |
ggaaaagagcatgcca-aaaatatattaaggagaagtaccctttcaatgccatgaattt------tatta--gtatcataacaaaaagag-gaagctcaa |
4292970 |
T |
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| Q |
150 |
aagaacatgagagcggtccaatcctaatgttttt---------agtctttcttcctctcttcttttcctccgcatgtataagttatcccatcacatatta |
240 |
Q |
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| T |
4292969 |
aaaaacatgagatcggtctgatccaaatgtttttcatgtttttagtctttattcctcttttcatttcctccgcctctataagttataccatcacatatta |
4292870 |
T |
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| Q |
241 |
taatacgaggaaaaatataagaaa |
264 |
Q |
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| T |
4292869 |
taatttgagggaaaataaaagaaa |
4292846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 4535612 - 4535680
Alignment:
| Q |
176 |
atgtttttagtctttcttcctctcttcttttcctccgcatgtataagttatcccatcacatattataat |
244 |
Q |
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| T |
4535612 |
atgtttttagtctttcttcctcttttcttttcctccaccagtataagttataccatcacatattataat |
4535680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 19411826 - 19411730
Alignment:
| Q |
148 |
aaaagaacatgagagcggtccaatcctaatgtttttagtctttcttcctctcttcttttcctccgcatgtataagttatcccatcacatattataat |
244 |
Q |
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| T |
19411826 |
aaaagaacatgaaattggtccgaccctgatgtttttaatctttcttcctcttttcttttcatccacctgtataagttatgccaccacatagtataat |
19411730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 4527773 - 4527670
Alignment:
| Q |
141 |
gaagctcaaaagaacatgagagcggtccaatcctaatgtttttagtctttcttcctctcttcttttcctccgcatgtataagttatcccatcacatatta |
240 |
Q |
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||||||||||||||||||| | ||| | ||| | ||||||||||||||||| ||||| ||||| || ||| | |||| ||||||| | ||||||||||| |
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| T |
4527773 |
gaagctcaaaagaacatgaaattggttcgatcttgatgtttttagtctttctccctcttttcttatcatccacttgtagaagttatacgatcacatatta |
4527674 |
T |
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| Q |
241 |
taat |
244 |
Q |
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|||| |
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| T |
4527673 |
taat |
4527670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 20994059 - 20993974
Alignment:
| Q |
124 |
atcataagaaaaaaggagaagctcaaaagaacatgagagcggtccaatcctaatgtttttagtctttcttcctctcttcttttcct |
209 |
Q |
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| T |
20994059 |
atcataacaaaaaaaaggaaggtcaaaagagcatgagatcggtctagtccttgcgtttttagtcttccttcctctctttttttcct |
20993974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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