View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15084_high_1 (Length: 818)
Name: NF15084_high_1
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 787; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 10 - 800
Target Start/End: Original strand, 45595276 - 45596066
Alignment:
| Q |
10 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595276 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
45595375 |
T |
|
| Q |
110 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595376 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
45595475 |
T |
|
| Q |
210 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595476 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
45595575 |
T |
|
| Q |
310 |
aaacaatgctttatcaatcttcattcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595576 |
aaacaatgctttatcaatcttcattcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcag |
45595675 |
T |
|
| Q |
410 |
tcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttgg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595676 |
tcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttgg |
45595775 |
T |
|
| Q |
510 |
agttaagggacaataccctttggccctctcttcttttggattgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595776 |
agttaagggacaataccctttggccctctcttcttttggatcgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtc |
45595875 |
T |
|
| Q |
610 |
atttcaaacatcaggaagaaaaattaaactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataa |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595876 |
atttcaaacatcaggaagaaaaattaaactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataa |
45595975 |
T |
|
| Q |
710 |
atcatgcgtgcagccgctgaatgcaagcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccacc |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45595976 |
atcatgcgtgcagccgctgaatgcaagcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccacc |
45596066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 370 - 543
Target Start/End: Original strand, 27151335 - 27151508
Alignment:
| Q |
370 |
accttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcag |
469 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||| ||||| ||||||||| ||||||||||| ||||| || |||||||||||||| || ||||||| | |
|
|
| T |
27151335 |
accttgctcattaacaatggataacgggatcgcagttcagccatatgggactcacccccataaatctctccagcagcaatatatatcggcgtctttgatg |
27151434 |
T |
|
| Q |
470 |
ggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggccctctcttct |
543 |
Q |
| |
|
| |||||||||||| |||| |||||||||||||||||||| |||||||| ||| ||||||||| ||||| |||| |
|
|
| T |
27151435 |
gatatccaagagcagtaagaaaaattccaacttcctttggtgttaaggggcaaaaccctttggacctctgttct |
27151508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 27148951 - 27149117
Alignment:
| Q |
112 |
ccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagcag |
211 |
Q |
| |
|
||||||||||| ||||| |||||||| || | |||||||| |||| ||||| ||| |||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
27148951 |
ccaagaaaacggcgatgaccttcaacagcccttgccatgtttccagaataagagggtataaatacatcactctcgatagatacaatatagtcaagagcag |
27149050 |
T |
|
| Q |
212 |
ccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatatta |
278 |
Q |
| |
|
||||||| || ||||||||| |||| ||||||||||| ||||| ||||||||| |||||||| |||| |
|
|
| T |
27149051 |
ccatttgagaagcatgattaaaaaagggttcaagctcctcaatggatgccaacgtttcctgaaatta |
27149117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 705 - 751
Target Start/End: Original strand, 27151677 - 27151723
Alignment:
| Q |
705 |
gataaatcatgcgtgcagccgctgaatgcaagcatatccttctcata |
751 |
Q |
| |
|
|||||||||||||| || || || ||||||||||||||||||||||| |
|
|
| T |
27151677 |
gataaatcatgcgtacacccactaaatgcaagcatatccttctcata |
27151723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University