View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_high_14 (Length: 488)
Name: NF15084_high_14
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 1947920 - 1948390
Alignment:
| Q |
1 |
gatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaatttatgcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1947920 |
gatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaatttatgcaat |
1948019 |
T |
|
| Q |
101 |
gcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacatt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948020 |
gcaagaaggtgcaacaaaaagggtagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacatt |
1948119 |
T |
|
| Q |
201 |
gttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatgttgattttcatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948120 |
gttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatgttgattttcatgt |
1948219 |
T |
|
| Q |
301 |
ttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgcttgannnnnnnnacga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
1948220 |
ttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagcattaaagtctccgaaagtgcacatttgcttgattttttttacga |
1948319 |
T |
|
| Q |
401 |
catgattgtgcctaaattagaaacaggaaacgacgttgctatcgatgttgaaattcaacaagaagaggaac |
471 |
Q |
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| T |
1948320 |
catgattgtgcctaaattagaaacaggaaacgacgttactattgatgttgaaattcaacaagaagaggaac |
1948390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 2 - 471
Target Start/End: Complemental strand, 1978485 - 1978016
Alignment:
| Q |
2 |
atgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaatttatgcaatg |
101 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1978485 |
atgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttactcgagttacttcaaatttatgcaatg |
1978386 |
T |
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| Q |
102 |
caagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacattg |
201 |
Q |
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|||||||||| | |||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
1978385 |
caagaaggtgaaccaaagagggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattg |
1978286 |
T |
|
| Q |
202 |
ttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatgttgattttcatgtt |
301 |
Q |
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||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1978285 |
ttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtt |
1978186 |
T |
|
| Q |
302 |
tataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgcttgannnnnnnnacgac |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
1978185 |
tataggtttgtttaaacaaacttcacctttcaagatgattgaaaagtttccaagcattaaagtctccgaaagtgcacatttgcttgattttttttacgac |
1978086 |
T |
|
| Q |
402 |
atgattgtgcctaaattagaaacaggaaacgacgttgctatcgatgttgaaattcaacaagaagaggaac |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
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|
| T |
1978085 |
atgattgtgcctaaattagaaacaggaaacgacgttactattgatgttgagattcaacaagaagaggaac |
1978016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 423
Target Start/End: Complemental strand, 1985396 - 1984979
Alignment:
| Q |
6 |
taccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaatttatgcaatgcaag |
105 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||||||| ||||||| |
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| T |
1985396 |
taccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcctacttgagttccttcaattttatgccatgcaag |
1985297 |
T |
|
| Q |
106 |
aaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacattgttat |
205 |
Q |
| |
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|| | | ||| || | || |||| || | |||||| ||||| || |||||| ||| || | || | ||| |||||| || ||||| || ||||| || |
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| T |
1985296 |
aa---gaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgcaattttgagggatattgtgat |
1985200 |
T |
|
| Q |
206 |
gctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattc---tcgtcaaaagaagctgctgatgaaatgttgattttcatgttt |
302 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| || ||| ||||| ||||||||| ||||||| || |||| | |
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| T |
1985199 |
gcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaaaatgctgatgatgtgttgatattgatgtgt |
1985100 |
T |
|
| Q |
303 |
ataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgcttgannnnnnnnacgaca |
402 |
Q |
| |
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||| | ||||||||| | | |||||| || |||||| ||||||||| ||| | ||| |||||| || ||||||||||||| || | |||| |
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| T |
1985099 |
ataaggttgtttaaagagatttcaccctttaagatgtttgaagagtatcctaacattcaagtcttagagtgtgcacatttgctagattttttgtatgaca |
1985000 |
T |
|
| Q |
403 |
tgattgtgcctaaattagaaa |
423 |
Q |
| |
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|||||||||| |||||||||| |
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|
| T |
1984999 |
tgattgtgccaaaattagaaa |
1984979 |
T |
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