View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_high_15 (Length: 482)
Name: NF15084_high_15
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5795674 - 5795453
Alignment:
| Q |
1 |
cgaaatgttgctggttttcgagggtgaaggaaacggaagacaacctatttgcaaagtgtgagtttgcgaatgaaatttggtataagatttttcattggtt |
100 |
Q |
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| T |
5795674 |
cgaaatgttgctggttttcgagggtgaaggaaacggaagacaacccatttgcaaagtgtgagtttgcgaatgaaatttggtataagatttttcattggtt |
5795575 |
T |
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| Q |
101 |
aggcgtatccatgatacggtttggggacctcttttgtcttgctagaaaattgttgtttatgtcttaggaaaaataagaaagtcaaggggttgcttctata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5795574 |
aggcgtatccatgatacggtttggggacctcttttgtcttgctagaaaattgttgtttatgtcttaggaaaaataagaaagccaaggggttgcttctata |
5795475 |
T |
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| Q |
201 |
accatgccttggcagtggtttg |
222 |
Q |
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| T |
5795474 |
accatgccttggcagtggtttg |
5795453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 285 - 464
Target Start/End: Complemental strand, 5794580 - 5794402
Alignment:
| Q |
285 |
tatctttatcatggagaactattatgctcacctaccacttagcaaaacccgatcaaaaacaaaaatcacttagcaaaacgattaattatttgtagtcgcc |
384 |
Q |
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| T |
5794580 |
tatctttatcatggagaactattatgctcacctaccacttagcaaaacccgatcaaaaa-aaaaatcacttagcaaaacgattaattatttgtagtcgcc |
5794482 |
T |
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| Q |
385 |
atcacattattgacataaaaaatctgcattaaactttagttgcaatgtccattcaaaatgtgattgttgatacgttgatt |
464 |
Q |
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| T |
5794481 |
atcacattattgacataaaaaatctgcattaaactttagttgcaatgtccattcaaaatgtgattgttgatacgttgatt |
5794402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 5795461 - 5795428
Alignment:
| Q |
260 |
agtggtttgttaatcgattgtaatgtatctttat |
293 |
Q |
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| T |
5795461 |
agtggtttgttaatcgattgtaatgtatctttat |
5795428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 13369995 - 13369935
Alignment:
| Q |
22 |
gggtgaaggaaacggaagacaacctatttgcaaagtgtgagtttgcgaatgaaatttggta |
82 |
Q |
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|||||||||||||||| ||| ||||||| |||| ||||||||||| | || ||||||||| |
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| T |
13369995 |
gggtgaaggaaacggaggaccacctattcacaaaatgtgagtttgcaagtgcaatttggta |
13369935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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