View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15084_high_16 (Length: 462)
Name: NF15084_high_16
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Complemental strand, 1719816 - 1719390
Alignment:
| Q |
10 |
aacaatatccgccaaggacgagcaccgaaagagtaatcagaatgaaactctgaggaaacttaagaccaggtatgcacacaacagaaattcaaagactgaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719816 |
aacaatatccgccaaggacgagcaccgaaagagtaatcagaatgaaactctgaggaaacttaagaccaggtatgcacacaacagaaattcaaagactgaa |
1719717 |
T |
|
| Q |
110 |
aatccagtttaagaaagacttaattatcttggaatacactttaatgaaacatgtagcgtaataatgtataaaatggaatttctgtcatagtaagaagctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719716 |
aatccagtttaagaaagacttaattatcttggaatacactttaatggaacatgtagcgtaataatgtataaaatggaatttctgtcatagtaagaagctc |
1719617 |
T |
|
| Q |
210 |
catgtaaaggctcattactaaacatttagaatgtcagctctaatatcttactaatcaagaaaggttccaactggcaccagtcccaaattctagataaggt |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
1719616 |
catataaaggctcattactaaacatttagaatgtcagctctaatatcttactaatcaagaaaggtt--------caccagtcccaaattctagataagat |
1719525 |
T |
|
| Q |
310 |
gccttgcctctcggtcattcatcaaggtattttcttcataccctttattttcaaagcaatttgtaggatttcattcttttgaaatcaatatcaagataat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719524 |
gccttgcctctcggtcattcatcaaggtattttcttcataccctttattttcaaagcaatttgtaggatttcattcttttgaaatcaatatcaagataat |
1719425 |
T |
|
| Q |
410 |
cgtaaaccggatatctacaatgacaagtacaactg |
444 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
1719424 |
cgtaaacctgatatctacaatgacaagtacaactg |
1719390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 275
Target Start/End: Complemental strand, 25421901 - 25421761
Alignment:
| Q |
131 |
aattatcttggaatacactttaatgaaacatgtagcgtaataatgtataaaatggaatttctgtcatagtaagaagctccatgtaaaggctcattactaa |
230 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| || ||||||||| |||||||||||| | || |
|
|
| T |
25421901 |
aattatcctggaatacactttaatggaacatgttgagtaataatgtataaaatggaatttctgtattat----aagctccatataaaggctcattgcaaa |
25421806 |
T |
|
| Q |
231 |
acatttagaatgtcagctctaatatcttactaatcaagaaaggtt |
275 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
25421805 |
acatttagaatgccagctctaataccttactaatcaagaaaggtt |
25421761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 25421762 - 25421678
Alignment:
| Q |
358 |
tttcaaagcaatttgtaggatttcattcttttgaaatcaat-atcaagataatcgtaaaccggatatctacaatgacaagtacaa |
441 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| || |||||| | ||||||| || ||||||||||||||| |||| |
|
|
| T |
25421762 |
tttcaaagcaatttgtaggatttccttcttttgaaatcaataattaagatatttgtaaacctgaaatctacaatgacaagaacaa |
25421678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 35436715 - 35436627
Alignment:
| Q |
354 |
ttattttcaaagcaatttgtaggatttcattcttttgaaatcaatatcaagataatcgtaaaccggatatctac-aatgacaagtacaa |
441 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
35436715 |
ttattttcaaatcaatttgtaggatttcattcttttgaaatcaatatcaggatagctgtaaacctgatatctacaaatgacaagtacaa |
35436627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 434
Target Start/End: Complemental strand, 35423417 - 35423320
Alignment:
| Q |
337 |
tattttct-tcataccctttattttcaaagcaatttgtaggatttcattcttttgaaatcaatatcaagataatcgtaaaccggatatctacaatgaca |
434 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| | |||||| ||||||| |||||||||||||||| |
|
|
| T |
35423417 |
tattttctgtcataccctttatttg-aaagcaattattaggatttcattattttgaaatcaatatgaggataattgtaaacctgatatctacaatgaca |
35423320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 32304259 - 32304182
Alignment:
| Q |
50 |
aatgaaactctgaggaaacttaagaccaggtatgcac-------acaacagaaattcaaagactgaaaatccagttta |
120 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
32304259 |
aatgagactctgaggaaaattaagaccaggtatgcacacaagacacaacagaaattcaaagactgaaattccagttta |
32304182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 32304173 - 32304125
Alignment:
| Q |
141 |
gaatacactttaatgaaacatgtagcgtaataatgtataaaatggaatt |
189 |
Q |
| |
|
||||||||||||||| |||| |||| ||||| |||| |||||||||||| |
|
|
| T |
32304173 |
gaatacactttaatggaacacgtagagtaatcatgtttaaaatggaatt |
32304125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University