View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_high_25 (Length: 267)
Name: NF15084_high_25
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 50177685 - 50177779
Alignment:
| Q |
1 |
gcgaaggttgatggtttttattacaagcggttgacattttctttatttgcgtttaaagtgtttcagcctcatacacccccgtattcacagggaac |
95 |
Q |
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| T |
50177685 |
gcgaaggttgatggtttttattacaagcggttgacattttctttatttgggtttaaagtgtttcagcctcatacacccccgtattcacagggaac |
50177779 |
T |
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Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 50177852 - 50177934
Alignment:
| Q |
168 |
gcacacgctttgccgacattcattgtaagactccttttttgacgtttcgtcaacttttccttcataaaaacaaataacaaaac |
250 |
Q |
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| T |
50177852 |
gcacacgctttgccgacattcattgtaagactccttttttgacgtttcatcaacttttccttcataaaaacaaataacaaaac |
50177934 |
T |
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