View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_high_28 (Length: 251)
Name: NF15084_high_28
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 42441603 - 42441754
Alignment:
| Q |
11 |
aagaatatctaaaaacttcaactttaaacacacttacaaaatgcataatcgatgcataaaccattcaaatttcataactcatacaaattttatattccgt |
110 |
Q |
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| T |
42441603 |
aagaatacctaaaaacttcaactttaaacacgcttacaaatttcataatcgatgcataaaccattcaaatttcataactcatacaaattttatattccgt |
42441702 |
T |
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| Q |
111 |
acataattcatacaaacttttgaaatccatactgattttcaattaatcaatg |
162 |
Q |
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| T |
42441703 |
acataattcatacaaacttttgaaattcatacagattttcaattaatcaatg |
42441754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 42441812 - 42441841
Alignment:
| Q |
222 |
cttataaacataaatggatatgttagtgaa |
251 |
Q |
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| T |
42441812 |
cttataaacataaatggatatgttagtgaa |
42441841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 4304525 - 4304609
Alignment:
| Q |
16 |
tatctaaaaacttcaacttt-aaacacacttacaaaatgcataatcgatgcataaaccattcaaatttcataactcatacaaatt |
99 |
Q |
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| T |
4304525 |
tatctaaaaacttcgacttttaaacatccttgcaaatttcataatctatacataattcattcaaatttcataaaccatacaaatt |
4304609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 43347791 - 43347715
Alignment:
| Q |
65 |
cataaaccattcaaatttcataactcatacaaattttatattccgtacataattcatacaaacttttgaaatccata |
141 |
Q |
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| T |
43347791 |
cataatccattcaaattccacaattcatacaaattttataatccttacatggtccatacaaattcttgaagtccata |
43347715 |
T |
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