View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_high_36 (Length: 213)
Name: NF15084_high_36
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_36 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 48407 - 48221
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48407 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
48308 |
T |
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| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48307 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
48221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 60946 - 60760
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60946 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
60847 |
T |
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| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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| T |
60846 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
60760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 73065 - 72879
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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| T |
73065 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
72966 |
T |
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| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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| T |
72965 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
72879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 18691756 - 18691570
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691756 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
18691657 |
T |
|
| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18691656 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
18691570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 15699495 - 15699309
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699495 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
15699396 |
T |
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| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15699395 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
15699309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 15712034 - 15711848
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15712034 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
15711935 |
T |
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| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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| T |
15711934 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
15711848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 15724512 - 15724326
Alignment:
| Q |
15 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15724512 |
atcagtaaggaggtcttgtaggacttcctctaggaagtaaggagtattgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaatacca |
15724413 |
T |
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| Q |
115 |
gggagtgattcgctttggaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatctgtgctg |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15724412 |
gggagtgattcgctttcgaggagggatttgcaacccttaatgaagacatctcgtgtcatgttagtgttactatctggatcagtgctg |
15724326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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