View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15084_high_5 (Length: 632)
Name: NF15084_high_5
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 275 - 614
Target Start/End: Original strand, 1329719 - 1330058
Alignment:
| Q |
275 |
ttgtgcaaaccgagggtgatttgttgaacttaggagatgatagagtgacaactgaagaacatggggacaaacttgccttagctttatttgatggggctgc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1329719 |
ttgtgcaaaccgagggtgatttgttgaacttaggagatgatagagtgacaactgaagaacatggggacaaactagccttagctttatttgatggggctgc |
1329818 |
T |
|
| Q |
375 |
accagcaacaagtgaaggtggaataaaagcacttccatggcatgcatttgacgagagtgcagattgggaaacagcgttggtacaatcaaccagccactta |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329819 |
accagcaacaagtgaaggtggaataaaagcacttccatggcatgcatttgatgagagtgcagattgggaaacagcgttggtacaatcaaccagccactta |
1329918 |
T |
|
| Q |
475 |
ggaaaccagcagcctgcattaggtggaggctttgatacattattgttggatggtatgtataaacaaggagaaatgaatgcagccatgcaaggagtgggat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329919 |
ggaaaccagcagcctgcattaggtggaggctttgatacattattgttggatggtatgtataaacaaggagaaatgaatgcagccatgcaaggagtgggat |
1330018 |
T |
|
| Q |
575 |
atggttgcagtggaagtgctagcagtgtagcacttggttc |
614 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1330019 |
atggtggcagtggaagtgctagcagtgtagcacttggttc |
1330058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1329445 - 1329669
Alignment:
| Q |
1 |
atttgtcgctcttctgagtaccctgagatagataaggtcacaccaaagaagttagaggttatggaagagtttatcaaagataagaacatgctagcacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329445 |
atttgtcgctcttctgagtaccctgagatagataaggtcacaccaaagaagttagaggttatggaagagtttatcaaagataagaacatgctagcacaaa |
1329544 |
T |
|
| Q |
101 |
gcaataaagctgatgttcaagaagagaacaattcggatgaagaagccaaggaacccgaacccgaacctgaaccggaagaggatatgaatgaagtcaaggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1329545 |
gcaataaagctgatgttcaagaagagaacaattcggatgaagaagccaaggaacccgaacccgaacctgaaccggaagaggatatgaatgcagtcaaggc |
1329644 |
T |
|
| Q |
201 |
ccttccaccaccagaggaaccagcc |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1329645 |
ccttccaccaccagaggaaccagcc |
1329669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University