View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_13 (Length: 509)
Name: NF15084_low_13
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 215 - 491
Target Start/End: Original strand, 40791922 - 40792198
Alignment:
| Q |
215 |
aactatttaacagtgaaagtgaaattaagtgagaaaattactcttttcacttctcaaatttctcttctaacacaattttttcattgatcgacgagtcgta |
314 |
Q |
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| T |
40791922 |
aactatttaacagtgaaagtgaaattaagtgagaaaattactcttttcacttctcaaatttctcttctaacacaattttttcattgatcgacgagtcgta |
40792021 |
T |
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| Q |
315 |
tattttcttttgtgacaagtaaaacttcaactttcaaatgttataatgtcatatcatcctaatatttgtgccaaaactcaactaatcaacttaatatctt |
414 |
Q |
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| T |
40792022 |
tattttcttgtgtgacaagtaaaacttcaacttccaaatgttataatgtcatatcatcctaatatttgtgccaaaactcaactaatcaacttaatatctt |
40792121 |
T |
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| Q |
415 |
gtttctaatatgtcatacaaattaactaaatatttaataagctcctaaaacaatatcacaaaagaatgtataaaaga |
491 |
Q |
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| T |
40792122 |
gtttctaatatgtcatacaaattaactaaatatttaataagctcctaaaacaatatcacaaaagaatgtataaaaga |
40792198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 40790831 - 40791023
Alignment:
| Q |
18 |
cttcatatatatgtagatgtggccatacgtgggagaagggtccatatactatgaaaaggcatattgtaaaagatccttaattatcttacnnnnnnnnaat |
117 |
Q |
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| T |
40790831 |
cttcatatatatgtagttgtggccatacgtgggagaagggtccatataatatgcaaaggcatattgtaaaagatccttaattatcttacttttttttaat |
40790930 |
T |
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| Q |
118 |
gatttgttccccaccaatattcttcacctccatgaatatgcagagtaaccaaaattccatattgttgtcattcttggtcctctctcagagtta |
210 |
Q |
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| T |
40790931 |
gatttgttccccaccaatattcttcacctccatgaatatgcagagtaaccaaaattccatattgttgtcattcttgatcctatctcagagtta |
40791023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 340 - 433
Target Start/End: Original strand, 40784708 - 40784799
Alignment:
| Q |
340 |
ttcaactttcaaatgttataatgtcatatcatcctaatatttgtgccaaaactcaactaatcaacttaatatcttgtttctaatatgtcataca |
433 |
Q |
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| T |
40784708 |
ttcaacttgcaagtgttataatgtcatatggacctaatatttgtgcc-aaactcaactaatcaacttaatat-ttttttctaatatgtcataca |
40784799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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