View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_14 (Length: 508)
Name: NF15084_low_14
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 45381976 - 45382450
Alignment:
| Q |
18 |
ctaactaacataaagcatgtatgaactaaagaaatggaaaatattttttaggaaactgctctaaatcatgttacaagttctgggataggaggagatggat |
117 |
Q |
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| T |
45381976 |
ctaactaacataaagcatgtatgaactaaagaaatggaaaatattttttaggaaactgctctaaatcatgttacaagttctgggataggaggagatggat |
45382075 |
T |
|
| Q |
118 |
ttggagctacccgcgagatgagcctaaggaaactcatttgggttgttactcgtattcaagttcaagtacagagatataacaaatggtaaacacatccatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382076 |
ttggagctacccgcgagatgagcctaaggaaactcatttgggttgttactcgtattcaagttcaagtacagagatataacaaatggtaaacacatccatg |
45382175 |
T |
|
| Q |
218 |
agatgcttctagcccctaccttgcataattatacataattgtttgtgagttgtaaacacaaaacgataaatttgacaggggagaagaaattgaaatcgat |
317 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382176 |
ag----------cccctaccttgcataattatacataattgttagtgagttgtaaacacaaaacgataaatttgacaggggagaagaaattgaaatcgat |
45382265 |
T |
|
| Q |
318 |
acttgggtggatgcagcaggaaagaatggaatgcgaagagattggataatccgagatcgttgtaccaaagagatcataactaaagcaacaaggtgcatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382266 |
acttgggtggatgcagcaggaaagaatggaatgcgaagagattggataatccgagatcgttgtaccaaagagatcataactaaagcaacaaggtgcatta |
45382365 |
T |
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| Q |
418 |
tttcatatacttttttatgcatccaaaatatgttatgatttataataccaaataatatgttaataggaaactttgtctttgatac |
502 |
Q |
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| T |
45382366 |
tttcatatacttttttatgcatccaaaatatgttatgatttataataccaaataatatgttaataggaaactttgtctttgatac |
45382450 |
T |
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