View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_19 (Length: 390)
Name: NF15084_low_19
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 38674433 - 38674781
Alignment:
| Q |
20 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtta |
119 |
Q |
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| T |
38674433 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctctt---caaagttcttctctatgtactaatcatcttcaacatattcgtta |
38674529 |
T |
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| Q |
120 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674530 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
38674629 |
T |
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| Q |
220 |
tgcacctggatcaggaggaggagatcctactcatccctaattaatttggaagaagctttacaacgaagaaaattaatcttcannnnnnnatatatatagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38674630 |
tgcacctggatcaggaggaggagatcctactcatccctaattaa-ttggaagaagctttacaacgaagaaaattaatcttcatttttttatatatatagt |
38674728 |
T |
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| Q |
320 |
tcgattaatgacattaactctcatgtgaagttccacgtgttagtgggctatat |
372 |
Q |
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| T |
38674729 |
tcgattaatgacattaactctcatgtgaagttccacgtgttagtgggctatat |
38674781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 38666682 - 38666922
Alignment:
| Q |
20 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666682 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctctt---caaagttcttctctatgtactaatcatcttcaacatattcgtta |
38666778 |
T |
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| Q |
120 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666779 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
38666878 |
T |
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| Q |
220 |
tgcacctggatcaggaggaggagatcctactcatccctaattaa |
263 |
Q |
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| T |
38666879 |
tgcacctggatcaggaggaggagatcctactcatccctaattaa |
38666922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 38668989 - 38668749
Alignment:
| Q |
20 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668989 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttc---aaagttcttctctatgtactaatcatcttcaacatattcgtta |
38668893 |
T |
|
| Q |
120 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668892 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
38668793 |
T |
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| Q |
220 |
tgcacctggatcaggaggaggagatcctactcatccctaattaa |
263 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38668792 |
agcacctggatcaagaggaggagatcctactcatccctaattaa |
38668749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 32781382 - 32781338
Alignment:
| Q |
251 |
catccctaattaatttggaagaagctttacaacgaagaaaattaat |
296 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32781382 |
catccctaattaatt-ggaggaagctttacaacgaagaaaattaat |
32781338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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