View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_2 (Length: 806)
Name: NF15084_low_2
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 177 - 741
Target Start/End: Complemental strand, 14457792 - 14457228
Alignment:
| Q |
177 |
atgttgtagtttaactgcactgtaaaattctactactcagctgtaagatataagagagataaattctaaactcatatccaattcaaatccatccatactg |
276 |
Q |
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| T |
14457792 |
atgttgtagtttaactgcactgtaaaattctactactcagctgtaagatataagagagataaattctaaactcatatccaattcaaatccatccatactg |
14457693 |
T |
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| Q |
277 |
accctgcaaggtgtgacctctataggattcagatccattaaatcctcaaaaatgattttgaacaatagaatcatttattgataatttgatatttgttagg |
376 |
Q |
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| T |
14457692 |
accctgcaaggtgtgacctctataggattcagatccattaaatcctcaaaattgattttgaacaatagaatcatttattgataattagatatttgttagg |
14457593 |
T |
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| Q |
377 |
gtttagggtttagccctaaacannnnnnnattagttattattatcaatcacctcataaaacacacaaaggaagatccttagtttaaactcggataacatc |
476 |
Q |
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| T |
14457592 |
gtttagggtttagccctaaacatttttttattagttattattatcaatcacctcataaaacacacaaaggaagatccttagtttaaactcggataacatc |
14457493 |
T |
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| Q |
477 |
agaaaatatccggtccaacaatcgcatcatttttagttgagatatattttacgaacttttattaagtaatttaattaacaatcatgcgttctcttagaga |
576 |
Q |
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| T |
14457492 |
agaaaatatccggtccaacaatcgcatcatttttagttgagatatattttacgaacttttattaagtaatttaattaacaatcatgtgttctcttagaga |
14457393 |
T |
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| Q |
577 |
aattgattcataaaattgtaaaagaaataaaatgttctaattatttattagcgagagtgtcttagagctctatttggcaaaacatagcggataataaact |
676 |
Q |
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| T |
14457392 |
aatttattcataaaattgtaaatgaaataaaatgttctaattatttattagcgagagtgtcttagagctctatttggcaaaacacagcggataataaact |
14457293 |
T |
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| Q |
677 |
aactcataagtaattcgatataaacttattatccatcagtgaacttataacggataaactaccag |
741 |
Q |
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| T |
14457292 |
aactcataagtaattcgatataaacttattatccataagtgaacttataacggataaactaccag |
14457228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 14457934 - 14457799
Alignment:
| Q |
1 |
caaagagagcattggaagctgttgtcgataagtatgaagaggagacgagcaagaagaggaggtgaatgtaagattcaccatgcacacaacaaactgatga |
100 |
Q |
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| T |
14457934 |
caaagagagcattggaagctgttgtcgataagtatgaagaggatacgagcaagaagaggaggcgaatgtaagattcaccatgcacacaacaagctgatgg |
14457835 |
T |
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| Q |
101 |
aaagccaatgttgtagtttgattttctttttattat |
136 |
Q |
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| T |
14457834 |
aaagccaatgttgtagtttgattttctttttattat |
14457799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 14466807 - 14466638
Alignment:
| Q |
1 |
caaagagagcattggaagctgttgtcgataagtatgaagaggagacgagcaagaagaggaggtgaatgtaagattcaccatgcacacaacaaactgatga |
100 |
Q |
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| T |
14466807 |
caaagagagcattggaagctgttgtcgacaagtacgaagaggaaacaagcaacaagaggaggcga-tgtaagattcaccgtgcacacaacaagctgatga |
14466709 |
T |
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| Q |
101 |
aaagccaatgttgtagtttgattttctttttattatcatgattacaaatgttttttaggattgtatatttat |
172 |
Q |
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| T |
14466708 |
aa-gccaatgttgcagtttgattttctttttatcatcatgattacagatgtttttaaggattgtgtatttat |
14466638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 740 - 797
Target Start/End: Complemental strand, 14456070 - 14456013
Alignment:
| Q |
740 |
agtaagcacaacaattttaatcacccaagtgtttaaaaccctcatcgcctttgcttct |
797 |
Q |
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| T |
14456070 |
agtaaccacaacaattttaatcacccaagtttttaaaaccctcatcgcctctgcttct |
14456013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 737 - 789
Target Start/End: Complemental strand, 49235241 - 49235189
Alignment:
| Q |
737 |
accagtaagcacaacaattttaatcacccaagtgtttaaaaccctcatcgcct |
789 |
Q |
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| T |
49235241 |
accagtaagcacaacaattttaatcacccaagtttttaaaaccttcatcgcct |
49235189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 789
Target Start/End: Complemental strand, 33619519 - 33619470
Alignment:
| Q |
740 |
agtaagcacaacaattttaatcacccaagtgtttaaaaccctcatcgcct |
789 |
Q |
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| T |
33619519 |
agtaagcacaacaatttcattcacccaagttgttaaaaccctcatcgcct |
33619470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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