View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_22 (Length: 354)
Name: NF15084_low_22
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 10485081 - 10485405
Alignment:
| Q |
8 |
cagcacagagctttggacttccttttcttagtccataccttaattctctcggacccaacttcacacatggtgcaaactttgcaacagcagcgtcaacaat |
107 |
Q |
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| T |
10485081 |
cagcacagagctttggacttccctttcttagtccataccttaattctctcggacccaacttcacacatggtgtaaactttgcaacagcagcgtcaacaat |
10485180 |
T |
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| Q |
108 |
caaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10485181 |
caaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattc |
10485280 |
T |
|
| Q |
208 |
attagggatcaaggtcaatttaacannnnnnncattga--ttttttgttctcattgatatcattctattaggacacaaatttacctttttcttcttcttc |
305 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
10485281 |
attagggatcaaggtcaatttaacatttttttcattgattttttttgttctcattgatatcattct--------tcaaatataccattttcttcttcttc |
10485372 |
T |
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| Q |
306 |
atttttcaaatatatggtcaggaggagtatttg |
338 |
Q |
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||||||||||||||||| |||||||||| |||| |
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| T |
10485373 |
atttttcaaatatatggccaggaggagtttttg |
10485405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 10499459 - 10499678
Alignment:
| Q |
8 |
cagcacagagctttggacttccttttcttagtccataccttaattctctcggacccaacttcacacatggtgcaaactttgcaacagcagcgtcaacaat |
107 |
Q |
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||||||| |||||||||||||| | ||| |||||||| ||||||||||| || | || ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10499459 |
cagcacaaagctttggacttccctatctaagtccatatcttaattctctggggtcaaatttcacacatggtgcaaactttgcaacagcagggtcaacaat |
10499558 |
T |
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| Q |
108 |
caaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||| |||||||||||| | | |||||||| |
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| T |
10499559 |
caaaattcctaatagtattatacctaatggaatgtttagtccattttcccttcaaattcagtccattcaattcaaagatttcataccaaaagcaaaattc |
10499658 |
T |
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| Q |
208 |
attagggatcaaggtcaatt |
227 |
Q |
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||||||||||||||| |||| |
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| T |
10499659 |
attagggatcaaggtaaatt |
10499678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 10502399 - 10502618
Alignment:
| Q |
8 |
cagcacagagctttggacttccttttcttagtccataccttaattctctcggacccaacttcacacatggtgcaaactttgcaacagcagcgtcaacaat |
107 |
Q |
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|||||||||||||||||||||| | ||| |||||||| ||||||||||| || | ||||||||||||||||||||||| ||||||| || |||||||| |
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| T |
10502399 |
cagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcaacaggaggatcaacaat |
10502498 |
T |
|
| Q |
108 |
caaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattc |
207 |
Q |
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||| || ||||||||||||||||||||||| || || |||||||||| |||| |||||||||||||||||||| |||||||||| ||| |||||| || |
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| T |
10502499 |
caatatccctaatagtattatacctaatgggatatttagtccattttctcttcaaattcagtacattcaattcaaagatttcatatccaaaacaaatctc |
10502598 |
T |
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| Q |
208 |
attagggatcaaggtcaatt |
227 |
Q |
| |
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||| ||||||||||| |||| |
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| T |
10502599 |
attcgggatcaaggtaaatt |
10502618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 10508105 - 10508324
Alignment:
| Q |
8 |
cagcacagagctttggacttccttttcttagtccataccttaattctctcggacccaacttcacacatggtgcaaactttgcaacagcagcgtcaacaat |
107 |
Q |
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|||||| ||||||| ||||||| | ||| |||||||| ||||||||||| || | ||||||||||||||||||||||| ||| ||| || |||||||| |
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| T |
10508105 |
cagcacggagctttcgacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcatcaggaggatcaacaat |
10508204 |
T |
|
| Q |
108 |
caaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattc |
207 |
Q |
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||| || ||||| |||||| |||||||||||| |||||||||||| |||| |||||| ||||||||||||| ||| |||||| | | ||||||| || |
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| T |
10508205 |
caatatccctaaaagtattctacctaatggaaaactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactc |
10508304 |
T |
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| Q |
208 |
attagggatcaaggtcaatt |
227 |
Q |
| |
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||||| ||||||||| |||| |
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| T |
10508305 |
attagagatcaaggtaaatt |
10508324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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