View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_23 (Length: 339)
Name: NF15084_low_23
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 38668989 - 38668688
Alignment:
| Q |
20 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668989 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttc---aaagttcttctctatgtactaatcatcttcaacatattcgtta |
38668893 |
T |
|
| Q |
120 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668892 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
38668793 |
T |
|
| Q |
220 |
tgcacctggatcaggaggaggagatcctactcatccctaattaagctgcgcatatatgcctttaaattaattgaaacttaggaagctttacaaagaagaa |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
38668792 |
agcacctggatcaagaggaggagatcctactcatccctaattaagctgcacatatatgccttcaaattaattgaaacttaggaagctttacaaataagaa |
38668693 |
T |
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| Q |
320 |
attag |
324 |
Q |
| |
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||||| |
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| T |
38668692 |
attag |
38668688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 38666682 - 38666983
Alignment:
| Q |
20 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666682 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctctt---caaagttcttctctatgtactaatcatcttcaacatattcgtta |
38666778 |
T |
|
| Q |
120 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666779 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
38666878 |
T |
|
| Q |
220 |
tgcacctggatcaggaggaggagatcctactcatccctaattaagctgcgcatatatgcctttaaattaattgaaac----ttaggaagctttacaaaga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||| ||||||||||||||||||| |
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| T |
38666879 |
tgcacctggatcaggaggaggagatcctactcatccctaattaagctgcacatatatgcattcaaattaattggaacttaattaggaagctttacaaaga |
38666978 |
T |
|
| Q |
316 |
agaaa |
320 |
Q |
| |
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||||| |
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| T |
38666979 |
agaaa |
38666983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 38674433 - 38674673
Alignment:
| Q |
20 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674433 |
agttgaatcaaacaaacatacatggctttctcttatagtagaataatcctctt---caaagttcttctctatgtactaatcatcttcaacatattcgtta |
38674529 |
T |
|
| Q |
120 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674530 |
cacctcaatcaggaggagtagattgcaggccattgtcattgaattattatcaatggtcttgggatcatggacttattttgcaatcacttccaaatggtaa |
38674629 |
T |
|
| Q |
220 |
tgcacctggatcaggaggaggagatcctactcatccctaattaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38674630 |
tgcacctggatcaggaggaggagatcctactcatccctaattaa |
38674673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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