View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_27 (Length: 313)
Name: NF15084_low_27
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 25583459 - 25583771
Alignment:
| Q |
1 |
tacacttaatgcatgtttggattgactgtgagttttttattaccgtaattttggcaaaaacttcattttgaagcttcaaccaaacgacggcgctactgtg |
100 |
Q |
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| T |
25583459 |
tacacttaatgcatgtttggattgactgtgagttttttattaccgtaattttggcaaaaactacattttgaagcttcaaccaaacgacggcgctactgtg |
25583558 |
T |
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| Q |
101 |
atttcgttaaactcactgtaattccaaacatgcagttaattcctccttttggagttgttgttttcatgatggaaatcaagtaaaacagtgcttttgcatt |
200 |
Q |
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| T |
25583559 |
atttcgttaaactcactgtaattccaaacatgcagttaattcctccttttggagttgttgttttcatgatggaaatcaagtaaaacagtgcttttacatt |
25583658 |
T |
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| Q |
201 |
tagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatggaagtggcttctgggctgttagagtatct |
300 |
Q |
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| T |
25583659 |
tagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatggaagtggcttctgggctgttagagtatct |
25583758 |
T |
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| Q |
301 |
ctgttggttgttt |
313 |
Q |
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| T |
25583759 |
ctgttggttgttt |
25583771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 42894191 - 42894075
Alignment:
| Q |
173 |
aaatcaagtaaaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
272 |
Q |
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| T |
42894191 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
42894092 |
T |
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| Q |
273 |
aagtggcttctgggctg |
289 |
Q |
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| T |
42894091 |
aggttgcttcagggctg |
42894075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 41696776 - 41696812
Alignment:
| Q |
98 |
gtgatttcgttaaactcactgtaattccaaacatgca |
134 |
Q |
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| T |
41696776 |
gtgatttcgttaaactcactgtcattccaaacatgca |
41696812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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