View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15084_low_40 (Length: 217)

Name: NF15084_low_40
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15084_low_40
NF15084_low_40
[»] chr2 (31 HSPs)
chr2 (1-194)||(27149330-27149522)
chr2 (1-205)||(2869729-2869935)
chr2 (104-205)||(27149002-27149103)
chr2 (13-205)||(15903937-15904129)
chr2 (4-192)||(16388509-16388698)
chr2 (1-202)||(10445480-10445679)
chr2 (1-74)||(14699043-14699116)
chr2 (1-74)||(34682370-34682443)
chr2 (1-74)||(39482919-39482992)
chr2 (1-48)||(13569342-13569389)
chr2 (1-48)||(28259213-28259260)
chr2 (1-42)||(8040080-8040121)
chr2 (1-74)||(8390186-8390259)
chr2 (1-74)||(20522208-20522281)
chr2 (4-48)||(1345580-1345624)
chr2 (1-48)||(2838066-2838113)
chr2 (1-48)||(10707288-10707335)
chr2 (150-205)||(16388307-16388362)
chr2 (1-40)||(25398517-25398556)
chr2 (1-40)||(25403655-25403694)
chr2 (1-205)||(31055902-31056105)
chr2 (1-48)||(33118150-33118197)
chr2 (89-202)||(8039923-8040033)
chr2 (1-205)||(33528657-33528858)
chr2 (1-43)||(34388877-34388919)
chr2 (104-197)||(3277870-3277962)
chr2 (120-205)||(10707405-10707490)
chr2 (1-74)||(21629932-21630004)
chr2 (104-205)||(23078609-23078709)
chr2 (1-41)||(23078506-23078546)
chr2 (118-205)||(34388719-34388804)
[»] chr7 (18 HSPs)
chr7 (1-205)||(28617261-28617465)
chr7 (19-205)||(3047111-3047297)
chr7 (1-74)||(9190044-9190117)
chr7 (1-143)||(20284009-20284150)
chr7 (1-74)||(2580378-2580451)
chr7 (1-74)||(29159791-29159864)
chr7 (89-205)||(9235679-9235794)
chr7 (1-48)||(21983298-21983345)
chr7 (1-143)||(33332486-33332627)
chr7 (2-205)||(35960674-35960876)
chr7 (1-74)||(46516346-46516419)
chr7 (1-48)||(5817306-5817352)
chr7 (1-48)||(7351662-7351709)
chr7 (9-205)||(4796711-4796907)
chr7 (4-48)||(21369769-21369814)
chr7 (1-74)||(49091649-49091722)
chr7 (4-43)||(6067213-6067253)
chr7 (1-48)||(47263692-47263737)
[»] chr4 (20 HSPs)
chr4 (1-205)||(1983336-1983536)
chr4 (1-205)||(5112100-5112298)
chr4 (1-96)||(39774341-39774436)
chr4 (1-205)||(5269227-5269431)
chr4 (1-75)||(24333796-24333870)
chr4 (1-205)||(34495859-34496060)
chr4 (1-74)||(36315265-36315338)
chr4 (1-74)||(36329474-36329547)
chr4 (2-205)||(5143119-5143319)
chr4 (1-74)||(10047367-10047440)
chr4 (1-74)||(38152475-38152548)
chr4 (1-74)||(39245982-39246055)
chr4 (3-205)||(5147537-5147736)
chr4 (1-74)||(16623329-16623402)
chr4 (88-205)||(37781722-37781837)
chr4 (1-48)||(5396707-5396754)
chr4 (3-77)||(18377345-18377418)
chr4 (1-205)||(25862058-25862259)
chr4 (5-42)||(3796559-3796596)
chr4 (4-48)||(19096162-19096206)
[»] scaffold0078 (2 HSPs)
scaffold0078 (1-205)||(23390-23589)
scaffold0078 (99-205)||(43117-43229)
[»] chr5 (21 HSPs)
chr5 (1-202)||(7160939-7161136)
chr5 (1-205)||(28832120-28832320)
chr5 (1-205)||(2630084-2630292)
chr5 (1-74)||(11917008-11917081)
chr5 (1-74)||(17003996-17004069)
chr5 (1-48)||(9353368-9353415)
chr5 (1-48)||(36932386-36932433)
chr5 (151-192)||(28537492-28537533)
chr5 (151-192)||(30899730-30899771)
chr5 (1-48)||(4410244-4410291)
chr5 (150-205)||(5611002-5611057)
chr5 (1-48)||(10281765-10281812)
chr5 (1-48)||(12084211-12084258)
chr5 (1-40)||(15044708-15044747)
chr5 (1-48)||(15464546-15464593)
chr5 (6-52)||(29748577-29748624)
chr5 (1-48)||(33030976-33031023)
chr5 (1-74)||(11181868-11181941)
chr5 (1-74)||(31300632-31300705)
chr5 (118-205)||(14520089-14520174)
chr5 (154-202)||(34842467-34842514)
[»] chr8 (21 HSPs)
chr8 (1-202)||(28307424-28307622)
chr8 (1-205)||(5990596-5990796)
chr8 (1-74)||(26403266-26403339)
chr8 (1-48)||(7412355-7412402)
chr8 (1-74)||(5702519-5702592)
chr8 (1-74)||(19752430-19752503)
chr8 (118-205)||(7493213-7493305)
chr8 (1-48)||(9765855-9765902)
chr8 (1-48)||(31071265-31071312)
chr8 (1-142)||(4696632-4696772)
chr8 (1-74)||(23799613-23799686)
chr8 (1-40)||(1261990-1262029)
chr8 (1-40)||(4760111-4760150)
chr8 (1-48)||(6127235-6127282)
chr8 (1-48)||(19175790-19175837)
chr8 (1-43)||(4456047-4456089)
chr8 (1-43)||(24873196-24873238)
chr8 (1-54)||(6813691-6813744)
chr8 (5-42)||(9054877-9054914)
chr8 (1-41)||(18870598-18870638)
chr8 (16-48)||(19491709-19491741)
[»] chr1 (25 HSPs)
chr1 (1-205)||(22819285-22819490)
chr1 (1-197)||(9023875-9024059)
chr1 (1-158)||(27104408-27104564)
chr1 (1-71)||(47703972-47704042)
chr1 (1-74)||(9476249-9476322)
chr1 (160-205)||(32737187-32737232)
chr1 (154-205)||(17345704-17345756)
chr1 (1-48)||(3281722-3281769)
chr1 (1-48)||(13604659-13604706)
chr1 (1-48)||(19072942-19072989)
chr1 (1-48)||(19120832-19120879)
chr1 (1-48)||(26644933-26644980)
chr1 (1-205)||(16124552-16124754)
chr1 (1-39)||(19358879-19358917)
chr1 (1-39)||(19361468-19361506)
chr1 (1-39)||(19380108-19380146)
chr1 (1-162)||(32889339-32889500)
chr1 (1-205)||(47098860-47099060)
chr1 (9-74)||(13598386-13598451)
chr1 (1-74)||(29651799-29651872)
chr1 (1-43)||(775691-775733)
chr1 (154-202)||(50521288-50521337)
chr1 (4-48)||(37069784-37069828)
chr1 (89-205)||(40816856-40816970)
chr1 (16-48)||(41361040-41361072)
[»] scaffold0184 (1 HSPs)
scaffold0184 (99-205)||(29615-29727)
[»] chr6 (18 HSPs)
chr6 (4-97)||(24436010-24436102)
chr6 (1-202)||(31936451-31936648)
chr6 (1-205)||(10077201-10077402)
chr6 (1-205)||(31979373-31979574)
chr6 (1-48)||(5757514-5757561)
chr6 (1-75)||(31076977-31077051)
chr6 (1-40)||(11856996-11857035)
chr6 (1-40)||(14742460-14742499)
chr6 (154-205)||(21355898-21355949)
chr6 (1-48)||(21356050-21356097)
chr6 (163-202)||(31077151-31077190)
chr6 (1-43)||(27165702-27165744)
chr6 (1-74)||(5572277-5572350)
chr6 (1-42)||(21801380-21801421)
chr6 (154-203)||(33721743-33721792)
chr6 (154-198)||(1115287-1115331)
chr6 (5-48)||(7294056-7294100)
chr6 (154-205)||(27165562-27165614)
[»] chr3 (28 HSPs)
chr3 (1-202)||(27986472-27986668)
chr3 (1-74)||(6794739-6794812)
chr3 (5-74)||(21711211-21711280)
chr3 (1-48)||(8370512-8370559)
chr3 (1-48)||(16264364-16264411)
chr3 (1-48)||(25795795-25795842)
chr3 (1-48)||(27974978-27975025)
chr3 (1-48)||(32143335-32143382)
chr3 (1-48)||(33386692-33386739)
chr3 (1-48)||(38210572-38210619)
chr3 (1-205)||(40592808-40593010)
chr3 (1-74)||(1417516-1417589)
chr3 (1-74)||(1736331-1736404)
chr3 (1-74)||(3716028-3716101)
chr3 (1-74)||(18552909-18552982)
chr3 (1-74)||(48438202-48438275)
chr3 (149-205)||(4387102-4387158)
chr3 (1-36)||(4386953-4386988)
chr3 (150-205)||(21156289-21156344)
chr3 (1-48)||(27452972-27453019)
chr3 (154-205)||(29100030-29100081)
chr3 (1-48)||(30709816-30709863)
chr3 (104-205)||(27038150-27038249)
chr3 (104-205)||(30709919-30710018)
chr3 (1-74)||(26298976-26299049)
chr3 (1-42)||(36029113-36029154)
chr3 (1-74)||(37466279-37466352)
chr3 (4-52)||(11168306-11168354)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-74)||(10717-10790)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-48)||(8455-8502)
[»] scaffold0006 (3 HSPs)
scaffold0006 (1-48)||(133316-133363)
scaffold0006 (9-74)||(5671-5736)
scaffold0006 (1-74)||(2480-2553)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-48)||(45267-45314)
[»] scaffold0087 (1 HSPs)
scaffold0087 (1-48)||(43997-44044)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-42)||(85703-85744)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 27149330 - 27149522
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  27149330 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttgt-gtgtttgttttcattattgctctcttatctttagt 27149428  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattacca 194  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27149429 tgatttgaatatgtttatggtattgctttacacatagatttagaactattttgttgttattgttacttgaggctactttactcattgattacca 27149522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2869729 - 2869935
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctct-cttatctttag 99  Q
    ||||||||||| |||||||||| | |||||||||||||||||| |||| ||| | || | |||| ||||||||| || |  ||  | | ||||||||| |    
T  2869729 attggagagctactctctcccctagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgttctcttcctttatttgcttatcttt-g 2869827  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattt--tgttgttattgttgcttgaggctactttactcattgattaccactt 197  Q
    ||| |||||||||| ||||||||||||| ||||| |||||||||  ||||||  ||||||| |||||| |||| |||||||||||||||||| || ||||    
T  2869828 ttgctttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttgttgttgttgtttgatgctactttactcattgatcactactt 2869927  T
Q  198 cctttgct 205  Q
    ||||||||    
T  2869928 cctttgct 2869935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 27149002 - 27149103
Alignment:
Q  104 tttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttg 203  Q
    |||||||||| || ||||||||||||||| ||||||||||| |||| || ||||| ||||||||||| |||||||||||||||||||| ||||| |||||    
T  27149002 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatgttattgttgttgttgcttgatgctactttactcattgattatcactttctttg 27149101  T
Q  204 ct 205  Q
    ||    
T  27149102 ct 27149103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 15903937 - 15904129
Alignment:
Q  13 ctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagttgatttgaatat 112  Q
    ||||||||  || |||||||||||||||| | |||| |||||||| |||||| || ||||||||| || ||| | |||||||||  |||  ||||  |||    
T  15903937 ctctctccgtcagagtaggtcatattggatcgaactaggttacca-tcttggtgtatttgttttctttcttgatttcttatctt--gttcctttggttat 15904033  T
Q  113 gtttatggtgttgctttacacatagatttagaactattt---tgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    | || ||||| || ||||||||||| ||||||||| |||   ||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||    
T  15904034 gcttgtggtgatgttttacacatagttttagaactgtttcgttgttgttgttgttgcttgaggatactttgctcattgattaccactccctttgct 15904129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 16388509 - 16388698
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcatatt-ggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagttg 102  Q
    ||||||||||||||||| | | |||||||||| || |||||||||| ||| | || | |||| ||||| |||||| |  || |||||||||||||| |||    
T  16388509 ggagagctgctctctcctctagagtaggtcatttttggaccaaactgggtaaacaatattggtgtgtt-gttttcctcctttctctcttatcttta-ttg 16388606  T
Q  103 atttgaatatgtttatggtgttgctttacacatagatttagaactattt--tgttgttattgttgcttgaggctactttactcattgattac 192  Q
     |||| ||||| |||| ||||||||| ||||||| || |||  || |||  |||||||  || |||||||| ||||||||||||||||||||    
T  16388607 ctttggatatgcttatagtgttgcttcacacatacatctaggtctgtttgttgttgttgctgctgcttgagactactttactcattgattac 16388698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 10445480 - 10445679
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| | | | || |||||| |||||||||    |  ||  |  |||||||||| |    
T  10445480 attggagagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatcttggtgtgtttgttcctctctttcattgcttatcttta-t 10445578  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||| |||| || |||| ||||| ||||| |||||||||  || |||| ||||| ||||||||||  |  ||||||  ||||||||||||||||||    
T  10445579 tgctttgattatgcttgtggttttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagacactttatccattgattaccacttcct 10445677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14699043 - 14699116
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  14699043 attggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 14699116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34682370 - 34682443
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | || ||||||||||||| |||| ||| | || |||||| |||||||||    
T  34682370 attggagagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 34682443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39482992 - 39482919
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||  ||||||||||||||||| |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  39482992 attggaggcctgctctctcccccatattaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgtt 39482919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13569389 - 13569342
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  13569389 attggagagctgctctctcccccagattaggtcatattggaccgaact 13569342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28259213 - 28259260
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  28259213 attggagagctgctctctcccccaaattaggtcatattggaccgaact 28259260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8040121 - 8040080
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggac 42  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  8040121 attggagagctgctctctcccccagattaggtcatattggac 8040080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8390186 - 8390259
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||| ||||||| |||| ||| | || | |||| |||||||||    
T  8390186 attggagagctgctctctcccccaaattaggtcattttggaccgaactgggtcaacaattttggtgtgtttgtt 8390259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20522281 - 20522208
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| | |||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  20522281 attggagggttgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 20522208  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 1345580 - 1345624
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||    
T  1345580 ggagaggtgctctctcccccagagtaggtcatattggaccgaact 1345624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2838066 - 2838113
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||||  |||||||||||||| |||||||||||||||||| ||||    
T  2838066 attggagatgtgctctctcccccagagtaggtcatattggaccgaact 2838113  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10707288 - 10707335
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||||| || ||||||||||||| |||||||||||||||| ||||    
T  10707288 attggagagttgttctctcccccatattaggtcatattggaccgaact 10707335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 16388362 - 16388307
Alignment:
Q  150 tttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    ||||||||| ||| |||||||| |||||||| ||||||||||| |||| |||||||    
T  16388362 tttgttgttgttgctgcttgagactactttattcattgattactactttctttgct 16388307  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25398556 - 25398517
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  25398556 attggagagctgctctctcccccagattaggtcatattgg 25398517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25403694 - 25403655
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  25403694 attggagagctgctctctcccccagattaggtcatattgg 25403655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31056105 - 31055902
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtctt-ggagtgtttgttttcattattgctct-cttatcttta 98  Q
    |||||||||||||||||||||| | | |||||||||||| ||| |||| ||| | || |||| || |||||||||    || || |  | ||||||||||    
T  31056105 attggagagctgctctctcccctagattaggtcatattgaaccgaactaggtcaacaatctttggtgtgtttgttccttttctttcattgcttatcttta 31056006  T
Q  99 gttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttc 198  Q
     ||| ||||| |||| || |||||||||| ||||| |||||||||  || ||||  |||| ||||||||||  |  ||||||   |||||||||||||||    
T  31056005 -ttgctttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttc 31055909  T
Q  199 ctttgct 205  Q
    |||||||    
T  31055908 ctttgct 31055902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33118197 - 33118150
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||| |||||||||||||||| | |||||||||||||||| ||||    
T  33118197 attggagggctgctctctcccccaaattaggtcatattggaccgaact 33118150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 8040033 - 8039923
Alignment:
Q  89 cttatctttagttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattga 188  Q
    |||||||||| ||| ||||| |||| || |||||||||| ||||| |||||||||  || ||||  |||| ||||||||||| |  ||||||   |||||    
T  8040033 cttatcttta-ttgctttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttgaagacactttatctattga 8039937  T
Q  189 ttaccacttccttt 202  Q
    ||||||||||||||    
T  8039936 ttaccacttccttt 8039923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 33528657 - 33528858
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| | ||||||||  |||||| |||||||||||||||| |||| ||| | || |||||| ||||||| || | || || | |   |||||||||     
T  33528657 attggagggttgctctctttcccatattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttg-ttcctttctttcattgtttatcttta- 33528754  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| |||| || |||||||||| ||||  ||||| |||  || |||  ||||| |||||||||| ||  ||||||  |||||||||||||||||    
T  33528755 ttgctttgattatgcttgtggtgttgctctacatttagatctaggtctgttt--ttgttgttgttgcttggggacactttatccattgattaccacttcc 33528852  T
Q  200 tttgct 205  Q
    ||||||    
T  33528853 tttgct 33528858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34388919 - 34388877
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggacc 43  Q
    ||||||||||| |||||||||||| | ||||||||||||||||    
T  34388919 attggagagctactctctcccccagattaggtcatattggacc 34388877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 3277962 - 3277870
Alignment:
Q  104 tttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccactt 197  Q
    ||||||||||||| | ||||||||| |||| ||||| |||| ||| ||||||||| ||||| |||| |  |||||| || ||||||||| ||||    
T  3277962 tttgaatatgtttgtagtgttgcttcacacttagatctagatcta-tttgttgttgttgtttcttgtgattactttgctaattgattactactt 3277870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 10707405 - 10707490
Alignment:
Q  120 gtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||||| ||||| ||||| |||   |||||| ||||| ||||||||||  |  ||||||| |||||||||||||||| ||||||    
T  10707405 gtgttgctctacacttagatctaggtatattttcttgttgttgttgcttggagacactttacacattgattaccacttcttttgct 10707490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 21630004 - 21629932
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||| ||||| | |||||||||||||||  |||| ||| | || |||||| |||||||||    
T  21630004 attggagagctgctctct-ccccagattaggtcatattggactgaactgggtcaacaatcttggtgtgtttgtt 21629932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 23078609 - 23078709
Alignment:
Q  104 tttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttg 203  Q
    ||||| |||| || |||||||||| ||||| ||||| |||   | |||| ||||| ||||||||||  |  ||||||| |||||||||||||||||||||    
T  23078609 tttgattatgcttgtggtgttgctctacacttagatctaggtatgtttt-ttgttgttgttgcttggagacactttacacattgattaccacttcctttg 23078707  T
Q  204 ct 205  Q
    ||    
T  23078708 ct 23078709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23078506 - 23078546
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgga 41  Q
    ||||||||| || ||||||||||||| ||||||||||||||    
T  23078506 attggagagttgttctctcccccatattaggtcatattgga 23078546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 34388804 - 34388719
Alignment:
Q  118 tggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||||||| ||||| ||||| |||  || ||||  |||| ||||||||||| |  |||||||  ||||||||||||||||||||||    
T  34388804 tggtgttgctctacacttagatctaggtctgtttt--tgttgttgttgcttgaagacactttacatattgattaccacttcctttgct 34388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 28617261 - 28617465
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| ||| | || | |||| |||||||||||| |  || ||  ||||||||| ||    
T  28617261 attggagagctgctctctcccccagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgttttcttcctttcttgcttatcttt-gt 28617359  T
Q  101 tgatttgaatatgtttatggtgttgcttt-acacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    || |||||||||| || |||||||||||| || |  ||| ||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  28617360 tgctttgaatatgcttgtggtgttgcttttactctaagacttaggtctattttgttgttcttgtttcttgaggctactttactcattgattaccacttcc 28617459  T
Q  200 tttgct 205  Q
    ||||||    
T  28617460 tttgct 28617465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 3047297 - 3047111
Alignment:
Q  19 cccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagttgatttgaatatgtttat 118  Q
    |||||| || ||||||||||||||| |||| |||||| | |||||| |||||||||||| || ||||| | |||||||  |||||||||| |||| || |    
T  3047297 cccccagagcaggtcatattggaccgaactgggttacga-tcttggtgtgtttgttttctttcttgctttattatctt--gttgatttgattatgcttgt 3047201  T
Q  119 ggtgttgctttacacatagatttagaactattttg---ttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||||||||||||| || |||||||||||||||   ||||| |||||||||||||  ||||||||||||||||| ||||| |||||||    
T  3047200 ggtgttgctttacacacagttttagaactattttgttattgttgttgttgcttgaggacactttactcattgattatcactttctttgct 3047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9190044 - 9190117
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  9190044 attggagagctgctctctcccccagactaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 9190117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 20284150 - 20284009
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| ||||||| || | || || | | |||||||||||     
T  20284150 attggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttg-ttcctttctttcatttcttatcttta- 20284053  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttag 143  Q
    ||| ||||| |||| || |||||||||| ||||| |||||||||    
T  20284052 ttgctttgattatgcttgtggtgttgctctacacttagatttag 20284009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2580451 - 2580378
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||||||||||| || | ||| | || |||||| |||||||||    
T  2580451 attggagagctgctctctcccccagactaggtcatattggaccgaattgggtcaacaatcttggtgtgtttgtt 2580378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29159864 - 29159791
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||| | | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  29159864 attggagagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 29159791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 9235679 - 9235794
Alignment:
Q  89 cttatctttagttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattga 188  Q
    |||||||||| ||| ||||| |||| || |||||||||| ||||  |||||||||  || |||| ||||| ||||||||||  |  ||||||  ||||||    
T  9235679 cttatcttta-ttgctttgattatgcttgtggtgttgctctacatttagatttaggtctgtttttttgttgttgttgcttggagacactttatccattga 9235777  T
Q  189 ttaccacttcctttgct 205  Q
    |||||||||||||||||    
T  9235778 ttaccacttcctttgct 9235794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21983345 - 21983298
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  21983345 attggagagctgctctctcccccagattaggtcatattggaccgaact 21983298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33332486 - 33332627
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctct-cttatctttag 99  Q
    ||||||| |||||||||||||||| | ||||||||||| || | |||| ||| | || |||||| |||||||||  | || || |  | ||||||||||     
T  33332486 attggagggctgctctctcccccagattaggtcatattagatcgaactgggtcaacaatcttggtgtgtttgttc-ctttctttcattgcttatcttta- 33332583  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttag 143  Q
    ||||||||| |||| ||||||||||||| ||||| |||||||||    
T  33332584 ttgatttgattatgcttatggtgttgctctacacttagatttag 33332627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 35960876 - 35960674
Alignment:
Q  2 ttggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagtt 101  Q
    |||||| |||||||||||||||| | |||||||||||| ||| |||| ||| | || |||||| |||||||||    | |||  | ||||||||||| ||    
T  35960876 ttggagggctgctctctcccccagattaggtcatattgaaccgaactcggtcaacaatcttggtgtgtttgttcatttcattaatttcttatcttta-tt 35960778  T
Q  102 gatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctt 201  Q
    | |||   |||| |  ||||||| || ||||| |||||||||  || |||||||||| ||||||||||     ||||||   ||||||||||||||||||    
T  35960777 gctttatttatgctggtggtgtttctctacacttagatttaggcctgttttgttgttgttgttgcttggaaacactttatctattgattaccacttcctt 35960678  T
Q  202 tgct 205  Q
    ||||    
T  35960677 tgct 35960674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46516346 - 46516419
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||| | | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  46516346 attggagggctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 46516419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5817306 - 5817352
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  5817306 attggagagctgctctct-ccccagagtaggtcatattggaccgaact 5817352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7351709 - 7351662
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||| |||||||||||||||||| ||||||| |||||||| ||||    
T  7351709 attggagggctgctctctcccccatactaggtcagattggaccgaact 7351662  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 4796711 - 4796907
Alignment:
Q  9 gctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctct-cttatctttagttgatttg 107  Q
    |||||| ||||||||| | |||||||| ||||||| |||| ||||| || |||||| |||||||||  | || |  |  | |||||||||| ||| ||||    
T  4796711 gctgctttctcccccagattaggtcattttggaccgaactgggttaacaatcttggtgtgtttgttc-ctttctctcattgcttatcttta-ttgctttg 4796808  T
Q  108 aatatgtttatggtgttgctttacacatagatttagaactattttgtt-gttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    | |||| || |||||||||| ||||| |||||||||  || |||| || ||| ||||||||||  |  ||||||   ||||||||||||||||||||||    
T  4796809 attatgcttgtggtgttgctctacacttagatttaggtctgttttttttgttgttgttgcttggagaaactttatctattgattaccacttcctttgct 4796907  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 21369769 - 21369814
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcat-attggaccaaact 48  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||    
T  21369769 ggagagctgctctctccgccatagtaggtcatcattggaccgaact 21369814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 49091722 - 49091649
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||||| |||||||| ||||| | ||||||||||||||| ||||| ||| | || |||||| | |||||||    
T  49091722 attggagagttgctctcttccccagattaggtcatattggactaaactgggtcaacaatcttggtgcgtttgtt 49091649  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 6067253 - 6067213
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtca-tattggacc 43  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  6067253 ggagagctgctctctcccccatactaggtcagtattggacc 6067213  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47263737 - 47263692
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||  ||||||| |||||||||||||||| ||||    
T  47263737 attggagagctgctctc--ccccatattaggtcatattggaccgaact 47263692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1983336 - 1983536
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| | |||| |||||||||||| || ||||| |||||| ||  ||    
T  1983336 attggagagctgctatctcccccatagtaggtcatattggaccgaactgggttacca-tattggtgtgtttgttttctttcttgctttcttatatt--gt 1983432  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||| ||||||| ||||| |||||||||| |||||||| |   | ||||||||| |||||||||||  | ||||||  |||||||||  |||||||    
T  1983433 tgttttgattatgtttgtggtgatgctttacacttagattta-agtcagtttgttgttgttgttgcttgaacccactttatccattgattattacttcct 1983531  T
Q  201 ttgct 205  Q
    |||||    
T  1983532 ttgct 1983536  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5112298 - 5112100
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    ||||||||||||||||| |||||| ||||| |||||||||||| |||| |||||||| |||||| |||||||||||| ||  | || |||||| ||  ||    
T  5112298 attggagagctgctctcacccccaaagtagatcatattggaccgaactgggttacca-tcttggtgtgtttgttttctttcgtactttcttatatt--gt 5112202  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || |||||   ||  | ||||||||||||||||| || |||| |||| |||||||||| |||||||||||| ||  |||||||||||||||||||| |||    
T  5112201 tgctttga---tgcctgtggtgttgctttacacaaagttttaaaactgttttgttgttgttgttgcttgagacttgtttactcattgattaccactccct 5112105  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39774341 - 39774436
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttg-gagtgtttgttttcattattgctctcttatctt 96  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||||  ||||||| ||||| | |||||||||||| || ||||| |||||||||    
T  39774341 attggagagctgctctatcccccagagtaggtcatattggaccgaactgagttacca-tcttgtgtgtgtttgttttctttcttgctatcttatctt 39774436  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5269227 - 5269431
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||  ||||||| || | || || | | |||||| ||||     
T  5269227 attggagggctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatcttgttgtgtttg-ttcctttctttcatttcttatattta- 5269324  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaacta-ttttgttgttattgttgcttgaggctactttactcattgattaccacttc 198  Q
    ||| ||||| |||| || |||||||||| ||||| ||||| |||   || |||||||||| ||||||||||  |  ||||||  ||||||||||||||||    
T  5269325 ttgctttgattatgcttgtggtgttgctctacacttagatctaggtatatttttgttgttgttgttgcttggagacactttatccattgattaccacttc 5269424  T
Q  199 ctttgct 205  Q
    |||||||    
T  5269425 ctttgct 5269431  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 24333870 - 24333796
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttt 75  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||  |||| || |||||| ||||||||||    
T  24333870 attggagagctgctctctcccccaaattaggtcatattggaccgaactgagttaacaatcttggtgtgtttgttt 24333796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 34495859 - 34496060
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| |||||||||||||||| |||| ||||| ||||||| |||| |||||||| |||||| |||||||||||| || || | |  ||| | ||||     
T  34495859 attggagggctgctctctcccccagagtaagtcatgttggaccgaactaggttacca-tcttggtgtgtttgttttctttctttcattgcttgt-ttta- 34495955  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| |||| || || || |||||||||| ||| ||| | |||  ||||||||| |||||||||||||||| |||   ||||||||||| || ||    
T  34495956 ttgctttgattatgcttgtgttgatgctttacacttagttttgggact-gtttgttgttgttgttgcttgaggctattttgtccattgattaccgctacc 34496054  T
Q  200 tttgct 205  Q
    ||||||    
T  34496055 tttgct 34496060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36315265 - 36315338
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  36315265 attggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattcttggtgtgtttgtt 36315338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36329474 - 36329547
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  36329474 attggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattcttggtgtgtttgtt 36329547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 5143319 - 5143119
Alignment:
Q  2 ttggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttagt 100  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||  | ||||||| || | || || | |  ||||||| || |    
T  5143319 ttggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctcagtgtgtttg-ttcctttctttcattgcttatctcta-t 5143222  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||| ||||||| |||||||| | ||||| |||||||||  || |||  ||||| |||||| |||  |  ||||||| ||||||||||||||||||    
T  5143221 tgttttgattatgtttgtggtgttgttctacacttagatttaggtctgttt--ttgttgttgttgtttggagacactttacacattgattaccacttcct 5143124  T
Q  201 ttgct 205  Q
    |||||    
T  5143123 ttgct 5143119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10047440 - 10047367
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  10047440 attggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 10047367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38152475 - 38152548
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | || ||||||||||||| |||| ||| | || |||||| |||||||||    
T  38152475 attggagagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 38152548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39246055 - 39245982
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  39246055 attggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 39245982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 5147736 - 5147537
Alignment:
Q  3 tggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttagtt 101  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||| ||| | || ||| || ||||||| || | || || | |  ||||||| || ||    
T  5147736 tggagagctgctccctcccccaaattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttg-ttcctttctttcattgcttatctcta-tt 5147639  T
Q  102 gatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctt 201  Q
    | ||||| ||||||| |||||||||| ||||| |||||||||   | | || ||||| ||||| ||||  |  ||||||| |||||||||||||||||||    
T  5147638 gttttgattatgtttgtggtgttgctctacacttagatttag--gtctgttattgttgttgtttcttggagacactttacacattgattaccacttcctt 5147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16623329 - 16623402
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||| ||| | |||||||||||| ||| |||| ||| | || |||||| |||||||||    
T  16623329 attggagagctgctctctcctccagattaggtcatattgaaccgaactgggtcaacaatcttggtgtgtttgtt 16623402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 37781837 - 37781722
Alignment:
Q  88 tcttatctttagttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattg 187  Q
    |||||||||| |||| |||||||||| || ||||||||||| |||| ||||| |||  ||| ||||||| | |||||| |||| | |||||||||||||     
T  37781837 tcttatcttt-gttgctttgaatatgcttgtggtgttgcttcacacttagatctaggtcta-tttgttgatgttgttgattgatgatactttactcatta 37781740  T
Q  188 attaccacttcctttgct 205  Q
    || || ||||| ||||||    
T  37781739 atgactacttcttttgct 37781722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5396707 - 5396754
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||| ||| | |||||||||||||||| ||||    
T  5396707 attggagagctgctctctcctccagattaggtcatattggaccgaact 5396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 18377418 - 18377345
Alignment:
Q  3 tggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttc 77  Q
    ||||| |||||||||||| ||| |||||||||||| | ||  |||| |||||||| |||||| ||||||||||||    
T  18377418 tggagggctgctctctcctccagagtaggtcatatagaactgaactgggttacca-tcttggtgtgtttgttttc 18377345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 25862058 - 25862259
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctct-cttatctttag 99  Q
    ||||||| || ||||||| ||||||| |||||||||||||||| ||||  || | || |||||| |||||| ||  | || || |  | ||||||||||     
T  25862058 attggagggccgctctcttccccatattaggtcatattggaccgaactgagtcaacaatcttggtgtgtttattc-ctttctttcattgcttatcttta- 25862155  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| |||| || |||||||||| ||||| |||||||||  || ||||  |||| ||||||||||  |  ||||||   ||||||||||||||||    
T  25862156 ttgctttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcc 25862253  T
Q  200 tttgct 205  Q
    ||||||    
T  25862254 tttgct 25862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 3796559 - 3796596
Alignment:
Q  5 gagagctgctctctcccccatagtaggtcatattggac 42  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  3796559 gagagttgctctctcccccatattaggtcatattggac 3796596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 19096162 - 19096206
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||||||||||||||||| | |||||||  ||||||||||||    
T  19096162 ggagagctgctctctcccccagactaggtcaatttggaccaaact 19096206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23589 - 23390
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||| |||| || ||||||| | |||||||||||||||||| |||| |||||||| ||||||  ||||||||||| || ||||| |||||||||  ||    
T  23589 attggatagcttctttctcccctaaagtaggtcatattggaccgaactaggttacca-tcttggt-tgtttgttttctttcttgctttcttatctt--gt 23494  T
Q  101 tgatttga--atatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttc 198  Q
    || ||| |  ||||| || |||||||||||||||| ||| |||| |||| ||||||||||||||   ||||||| || ||||||||||||||||||||||    
T  23493 tgctttaattatatgcttgtggtgttgctttacacttagttttataactgttttgttgttattg---cttgaggatattttactcattgattaccacttc 23397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 43229 - 43117
Alignment:
Q  99 gttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgct------tgaggctactttactcattgattac 192  Q
    |||| ||||| |||| || |||||||||||||||||||| ||| ||||| |||||||||| |||||| |      ||||| |||||||||||||||||||    
T  43229 gttgctttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttgttgttggttgaggatactttactcattgattac 43130  T
Q  193 cacttcctttgct 205  Q
    |||||||||||||    
T  43129 cacttcctttgct 43117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 7160939 - 7161136
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||| ||||||||| |||||||||||||||| | |||||| | |||||| | |||| |||||||||||| || ||||| |||||  ||| ||    
T  7160939 attggagagctgatctctcccctatagtaggtcatattgaatcaaactggattacca-ttttggtgtgtttgttttctttcttgctttctta--ttttgt 7161035  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||| ||||  | |||||||||||||||||||| |||| |||| |||| || || ||||||||||| | ||| |||||||||| |||||||| |||    
T  7161036 tgctttgattatgcctgtggtgttgctttacacatagttttaaaact-tttttttttttttgttgcttgaagataccttactcattgcttaccactccct 7161134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 28832320 - 28832120
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||  ||| | || |||||| ||||||||||   |  ||  |  |||||||||| |    
T  28832320 attggagggctgctctctcccccagattaggtcatattggaccgaaccgggtcaacaatcttggtgtgtttgtttgtttctttcattgcttatcttta-t 28832222  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    |||||||| |||| || |||||||||| ||||| |||| ||||  || |||  ||||| ||||||||||| |  ||||||  ||||||||||||||||||    
T  28832221 tgatttgattatgcttgtggtgttgctctacacttaga-ttaggtctgttt--ttgttgttgttgcttgaagacactttatccattgattaccacttcct 28832125  T
Q  201 ttgct 205  Q
    |||||    
T  28832124 ttgct 28832120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2630292 - 2630084
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcat-tattgctctcttatctttag 99  Q
    |||| ||||||||| |||||| || || ||||||||||||||| |||| ||||| || | |||  | |||||||||  | | || || |||||||| ||     
T  2630292 attgaagagctgctatctccctcaaagcaggtcatattggaccgaactaggttaacaatattgatgcgtttgttttattctcttcct-tcttatctcta- 2630195  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattt-----tgttgttattgttgcttgaggctactttactcattgattacca 194  Q
    ||| ||| |||||| || |||||||||| | ||| |||||||||  ||||||     ||||||| ||||||||||||||||||||| |||||| |||| |    
T  2630194 ttgctttaaatatgcttgtggtgttgctctgcacttagatttaggcctatttgtttttgttgttgttgttgcttgaggctactttattcattgcttacta 2630095  T
Q  195 cttcctttgct 205  Q
    |||||||||||    
T  2630094 cttcctttgct 2630084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11917008 - 11917081
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||| | || ||| || |||||||||    
T  11917008 attggagagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttgtt 11917081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17003996 - 17004069
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||| ||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  17003996 attgaagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 17004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9353368 - 9353415
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  9353368 attggagagctgctctctcccccagattaggtcatattggaccgaact 9353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36932386 - 36932433
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  36932386 attggagagctgctctctcccccagattaggtcatattggaccgaact 36932433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 28537533 - 28537492
Alignment:
Q  151 ttgttgttattgttgcttgaggctactttactcattgattac 192  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  28537533 ttgttgttgttgttgcttgagactactttactcattgattac 28537492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 30899771 - 30899730
Alignment:
Q  151 ttgttgttattgttgcttgaggctactttactcattgattac 192  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  30899771 ttgttgttgttgttgcttgaggctactttgctcattgattac 30899730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4410244 - 4410291
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | ||||||| |||||||| ||||    
T  4410244 attggagagctgctctctcccccagactaggtcagattggaccgaact 4410291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 5611057 - 5611002
Alignment:
Q  150 tttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||| || ||||||||| || |||||||||||||||||||| ||||| ||||||    
T  5611057 tttgttatttttgttgcttaagactactttactcattgattactacttcatttgct 5611002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10281812 - 10281765
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| |  ||||||||||||||| ||||    
T  10281812 attggagagctgctctctcccccagatcaggtcatattggaccgaact 10281765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12084211 - 12084258
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||| ||||||| ||||||||| |||||| ||||    
T  12084211 attggagagctgctctctgccccatattaggtcatagtggaccgaact 12084258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15044747 - 15044708
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  15044747 attggagagctgctctctcccccatattaggccatattgg 15044708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15464593 - 15464546
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||||    
T  15464593 attggagagctgctctctcccccagattagatcatattggaccgaact 15464546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 29748577 - 29748624
Alignment:
Q  6 agagctgctctctcccccatagtaggtca-tattggaccaaacttggt 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  29748577 agagctgctctctcccccaaagtaggtcagtattggaccgaacttggt 29748624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33030976 - 33031023
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| |||| |||||||| |||| ||||    
T  33030976 attggagagctgctctctcccccagagtatgtcatatttgaccgaact 33031023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11181868 - 11181941
Alignment:
Q  1 attggagagctgctctctccccc-atagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| |||| |||||||| |||||| |||||||||    
T  11181868 attggagggttgctctctccccctagagtaggtcatattagaccgaactaggttacca-tcttggtgtgtttgtt 11181941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31300632 - 31300705
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||||| | ||||||||| || | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  31300632 attggagagtttctctctccctcagactaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 31300705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 14520174 - 14520089
Alignment:
Q  118 tggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||||||| ||||| ||||| |||  || ||||  |||| ||||||||||  |  ||||||| |||||||||||||||||||||||    
T  14520174 tggtgttgctctacacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttgct 14520089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 34842514 - 34842467
Alignment:
Q  154 ttgttattgttgcttgaggctactttactcattgattaccacttccttt 202  Q
    ||||| ||| |||||||||||||||||||| |||||||| |||||||||    
T  34842514 ttgttgttgctgcttgaggctactttactc-ttgattactacttccttt 34842467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28307622 - 28307424
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||||||||  ||||| |||||||||| ||||||| |||| |||||||| |||||| ||||||  ||||||| ||||| |||||| |||| |    
T  28307622 attggagagctgctctcatccccagagtaggtcattttggaccgaactgggttaccaatcttggcgtgttt-atttcattcttgctttcttatattta-t 28307525  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||  |||| || ||||| || | ||||| |||||||||   || ||||||||| | ||| ||||||||||||| ||||||||||||| |||||||    
T  28307524 tgctttgtttatgcttgtggtgctgttatacacttagatttaggttta-tttgttgttgtcgttacttgaggctacttgactcattgattactacttcct 28307426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5990596 - 5990796
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttg-ttttcattattgctctcttatctttag 99  Q
    |||||||||| ||||||||||||| | || ||||||||||||||||||| ||||||| |||||  ||| ||| |||||||| |||||  ||||||||| |    
T  5990596 attggagagccgctctctcccccacaatatgtcatattggaccaaactt-gttaccaatcttgttgtgcttgtttttcattcttgcttgcttatcttt-g 5990693  T
Q  100 ttg-atttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttc 198  Q
    |||  |||||||||| || |||| ||| | ||||| |||||||||  ||||    ||||| ||||||||||| |||||||||  |||||||||| |||||    
T  5990694 ttgcttttgaatatgcttgtggttttgttctacacttagatttaggtctat----ttgttgttgttgcttgatgctactttatccattgattactacttc 5990789  T
Q  199 ctttgct 205  Q
    |||||||    
T  5990790 ctttgct 5990796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26403266 - 26403339
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  26403266 attggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 26403339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7412402 - 7412355
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7412402 attggagagctgctctctcccccatattaggtcatattggaccgaact 7412355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5702519 - 5702592
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| | |||||||||||||||| |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  5702519 attggagggatgctctctcccccatattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 5702592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19752430 - 19752503
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||| | | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  19752430 attggagagctgctctctcccctagactaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgtt 19752503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 7493213 - 7493305
Alignment:
Q  118 tggtgttgctttacacatagatttagaactattt-----tgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||||||| ||||| |||||||||| ||||||     |||||||  || |||||||| ||||||||| |||||||||| ||||||||||||    
T  7493213 tggtgttgctctacacttagatttagatctatttgttgttgttgttgctgctgcttgagactactttacacattgattactacttcctttgct 7493305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9765855 - 9765902
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  9765855 attggagagctgctctctcccccagattaggtcatattggaccgaact 9765902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31071265 - 31071312
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  31071265 attggagagctgctctctcccccagattaggtcatattggaccgaact 31071312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4696632 - 4696772
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgt---tttcatt-attgctctcttatctt 96  Q
    ||||||| |||||||||||||||| | |||||||||||||| | |||| ||| | || |||||| ||||||||   |||| || ||||    ||||||||    
T  4696632 attggagggctgctctctcccccagattaggtcatattggatcgaactgggtcaacaatcttggtgtgtttgttcatttctttcattg----cttatctt 4696727  T
Q  97 tagttgatttgaatatgtttatggtgttgctttacacatagattta 142  Q
    || ||| ||||| ||||||| |||||||||| ||||| ||||||||    
T  4696728 ta-ttgctttgattatgtttgtggtgttgctctacacttagattta 4696772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 23799613 - 23799686
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||| ||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  23799613 attggagggctgctctctcctccaaattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 23799686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1261990 - 1262029
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  1261990 attggagagctgctctctcccccagattaggtcatattgg 1262029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4760111 - 4760150
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  4760111 attggagagctgctctctcccccatattaggccatattgg 4760150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6127282 - 6127235
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||| ||||| | |||||||||||||||| ||||    
T  6127282 attggagagctgctctcttccccaaattaggtcatattggaccgaact 6127235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19175790 - 19175837
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||||| |||||||||||||| | |||||||||||||||| ||||    
T  19175790 attggagagttgctctctcccccagattaggtcatattggaccgaact 19175837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4456089 - 4456047
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggacc 43  Q
    |||||||||||||||||||||||| | |||| |||||||||||    
T  4456089 attggagagctgctctctcccccagattaggccatattggacc 4456047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24873238 - 24873196
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggacc 43  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||    
T  24873238 attggagggctgctctctcccccatactaggtcagattggacc 24873196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6813744 - 6813691
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggtta 54  Q
    |||||||||||||||||||||| |  |||||| |||||||||| |||| |||||    
T  6813744 attggagagctgctctctcccctagtgtaggttatattggaccgaactgggtta 6813691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 9054877 - 9054914
Alignment:
Q  5 gagagctgctctctcccccatagtaggtcatattggac 42  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  9054877 gagagctgctctctcctccagagtaggtcatattggac 9054914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18870598 - 18870638
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgga 41  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  18870598 attggagagctgctctctcccccagattaggccatattgga 18870638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 19491741 - 19491709
Alignment:
Q  16 tctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||||||| ||||    
T  19491741 tctcccccatagtaggtcatattggaccgaact 19491709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22819490 - 22819285
Alignment:
Q  1 attggagagctgctctctccccc-atagtaggtcatattggaccaaacttggttaccagtcttg-gagtgtttgttttcattattgctctcttatcttta 98  Q
    ||||||| ||| ||||||||||| | ||||||||||||||||||||| | |||||||| ||||| | |||||||||||| || ||||| |||||||||      
T  22819490 attggagggctactctctccccccagagtaggtcatattggaccaaattgggttacca-tcttgtgtgtgtttgttttctttcttgctttcttatctt-- 22819394  T
Q  99 gttgatttgaatatgtttatggtgttgctttacacatagatttagaactatt--ttgttgttattgttgcttgaggctactttactcattgattaccact 196  Q
    |||||||||| |||| || ||||| || ||||||  ||| ||||  ||| ||  |||||||| ||||||||| |||  ||||||  |||||||||||| |    
T  22819393 gttgatttgattatgcttgtggtgatgttttacatttagttttaagactgtttgttgttgttgttgttgcttaaggacactttatccattgattaccatt 22819294  T
Q  197 tcctttgct 205  Q
    | |||||||    
T  22819293 ttctttgct 22819285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9023875 - 9024059
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    ||||||||||| || | | ||||||| |||||||||||||| | |||| ||||||||        |||||||||||| || ||||| ||||||||||| |    
T  9023875 attggagagctactatattccccataataggtcatattggagcgaactaggttaccat-------gtgtttgttttctttcttgctttcttatcttta-t 9023966  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactat-tttgttgttattgttgcttgaggctactttactcattgattaccactt 197  Q
    ||  |||| |||| || |||||||||| ||||| |||||||||   ||| ||||||||||   ||||||| ||||||||||  |||||||||||||||    
T  9023967 tgcattgattatgcttgtggtgttgctatacacttagatttag--gtatgtttgttgtta---ttgcttggggctactttatccattgattaccactt 9024059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27104408 - 27104564
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    |||||||||||||||||||||||| | ||||| |||||||||| ||||  || | || |||||| ||||||| || | ||||| | |  ||||||||||     
T  27104408 attggagagctgctctctcccccagattaggttatattggaccgaactgtgtcaacaatcttggtgtgtttg-ttcctttatttcattgcttatcttta- 27104505  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgtt 158  Q
    ||| ||||| |||| || |||||||||| ||||| |||||||||  || ||||||||||    
T  27104506 ttgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttttgttgtt 27104564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47703972 - 47704042
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgttt 71  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| ||||||    
T  47703972 attggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgttt 47704042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9476322 - 9476249
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||| | | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  9476322 attggagagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 9476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 32737187 - 32737232
Alignment:
Q  160 ttgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||    
T  32737187 ttgttgcttgaggctactttgctcattgatcaccacttcctttgct 32737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 17345704 - 17345756
Alignment:
Q  154 ttgttattgttgcttgaggctacttt-actcattgattaccacttcctttgct 205  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17345704 ttgttgttgttgcttgaggctacttttactcattgattactacttcctttgct 17345756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3281769 - 3281722
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  3281769 attggagagctgctctctcccccagattaggtcatattggaccgaact 3281722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13604659 - 13604706
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  13604659 attggagagctgctctctcccccatattaggtcatattgaacctaact 13604706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19072989 - 19072942
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  19072989 attggagagctgctctctcccccagattaggtcatattggaccgaact 19072942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19120879 - 19120832
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  19120879 attggagagctgctctctcccccagattaggtcatattggaccgaact 19120832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26644933 - 26644980
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  26644933 attggagagctgctctctcccccagattaggtcatattggaccgaact 26644980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 16124552 - 16124754
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| |||||||||||||||| | |||||||||||||||| ||||  || | || |||||| |||||||||    || || | |  ||||||||||     
T  16124552 attggagggctgctctctcccccagattaggtcatattggaccgaactgagtcaacaatcttggtgtgtttgttccttttctttcatagcttatcttta- 16124650  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| ||||||| |||||||||| ||||  ||||| |||  || |||  ||||| ||||||||||     | |||| ||||||||||||||||||    
T  16124651 ttgctttgattatgtttgtggtgttgctctacatttagatctaggtctgttt--ttgttgttgttgcttggacacattttattcattgattaccacttcc 16124748  T
Q  200 tttgct 205  Q
    ||||||    
T  16124749 tttgct 16124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19358879 - 19358917
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattg 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  19358879 attggagagctgctctctcccccatattaggtcatattg 19358917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19361468 - 19361506
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattg 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  19361468 attggagagctgctctctcccccatattaggtcatattg 19361506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19380108 - 19380146
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattg 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  19380108 attggagagctgctctctcccccatattaggtcatattg 19380146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 32889500 - 32889339
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt-ttcattattgctctcttatctttag 99  Q
    |||||||||||||||| ||||||| | |||||||||||||||| |||| | | | || |||||| |||||||||  ||  | ||  |  ||||||||||     
T  32889500 attggagagctgctctatcccccagactaggtcatattggaccgaactagatcaacaatcttggtgtgtttgttcctctcttttcattgcttatcttta- 32889402  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattg 162  Q
    ||| ||||  |||  || |||||||||| ||||| |||||||||| || ||||||||||||||    
T  32889401 ttgctttggttatacttgtggtgttgctctacacttagatttagatctgttttgttgttattg 32889339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 47098860 - 47099060
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    ||||||| |||||||||||||||| | | |||||||||||||| |||| ||| | || |||||| |||||||||    |  ||| |  |||||||||| |    
T  47098860 attggagggctgctctctcccccagattcggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttgattgcttatcttta-t 47098958  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||| |||  || |||||||||| ||||| |||||||||  || ||||||||   ||||| ||||  |  ||||||   |||||||||||||||||    
T  47098959 tgctttgattatacttgtggtgttgctctacacttagatttaggtctgttttgttg---ttgttacttggagacactttatctattgattaccacttcct 47099055  T
Q  201 ttgct 205  Q
    |||||    
T  47099056 ttgct 47099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 13598451 - 13598386
Alignment:
Q  9 gctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  13598451 gctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 13598386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29651872 - 29651799
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| |  | |||||| |||||||||    
T  29651872 attggagtgctgctctctcccccagattaggtcatattggaccgaactgggtcaaaaatcttggtgtgtttgtt 29651799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 775733 - 775691
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggacc 43  Q
    ||||||||||| |||||||||||| | ||||||||||||||||    
T  775733 attggagagctactctctcccccagattaggtcatattggacc 775691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 50521288 - 50521337
Alignment:
Q  154 ttgttattgttgcttgaggctacttt-actcattgattaccacttccttt 202  Q
    ||||| |||||| ||||| ||||||| |||||||||||||||||||||||    
T  50521288 ttgttgttgttgtttgagactacttttactcattgattaccacttccttt 50521337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 37069828 - 37069784
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||    
T  37069828 ggagagatgctctctcccccagattaggtcatattggaccgaact 37069784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 40816856 - 40816970
Alignment:
Q  89 cttatctttagttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattga 188  Q
    |||||||||| ||| ||||| |||| |  |||||||||| ||||| |||||||||  || |||| ||||| ||||||||||  |  ||||||   |||||    
T  40816856 cttatcttta-ttgctttgattatgctcgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagacactttatctattga 40816953  T
Q  189 ttaccacttcctttgct 205  Q
    |||||||||||||||||    
T  40816954 ttaccacttcctttgct 40816970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 41361040 - 41361072
Alignment:
Q  16 tctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||||||| ||||    
T  41361040 tctcccccatagtaggtcatattggaccgaact 41361072  T

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Target: scaffold0184 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 29615 - 29727
Alignment:
Q  99 gttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgct------tgaggctactttactcattgattac 192  Q
    |||| ||||| |||| || |||||||||||||||||||| ||| ||||| |||||||||| |||||| |      ||||| |||||||||||||||||||    
T  29615 gttgctttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttgttgttggttgaggatactttactcattgattac 29714  T
Q  193 cacttcctttgct 205  Q
    |||||||||||||    
T  29715 cacttcctttgct 29727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 24436010 - 24436102
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatcttt 97  Q
    |||| |||||||||||||| | |||||||||||||||| | |||| |||||||| |||||| |||||||||||| || ||||| ||||||||||    
T  24436010 ggagggctgctctctcccctagagtaggtcatattggatcgaactgggttacca-tcttggtgtgtttgttttctttcttgctttcttatcttt 24436102  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 31936648 - 31936451
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    ||||||||||||||||||| |||| | |||||||||||||||| |||| ||| | || |||||| |||||||||   ||  ||  |  |||||||||| |    
T  31936648 attggagagctgctctctctcccagactaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgttcctatctttcattgcttatcttta-t 31936550  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || ||||  |||| || |||||||||| ||||| | |||| ||  || ||||||||   ||||||||||  |  ||||||| ||||||||||||||||||    
T  31936549 tgctttgtttatgcttgtggtgttgctctacactttgattaaggtctgttttgttg---ttgttgcttggagacactttacacattgattaccacttcct 31936453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10077201 - 10077402
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| |||||||||||||||| | |||||||||||||||| || | ||| | || |||||| ||||||| || | || || | |  ||||||||||     
T  10077201 attggagggctgctctctcccccagattaggtcatattggaccgaattgggtcaacaatcttggtgtgtttg-ttcctttctttcattgcttatcttta- 10077298  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| |||| || |||||||||| ||||| |||||||||  || |||  ||||| ||||||||||  |  ||||||   ||||||||||||||||    
T  10077299 ttgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccacttcc 10077396  T
Q  200 tttgct 205  Q
    ||||||    
T  10077397 tttgct 10077402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31979574 - 31979373
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||| |||||||||||||||| | || ||||||||||||| |||| ||| | || |||||| ||||||| || |  |||| | |  ||||||||||     
T  31979574 attggagggctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttg-ttcctctatttcattgcttatcttta- 31979477  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| |||| || || ||||||| ||||| |||||||||  || |||  ||||| ||||||||||| |  ||||||   ||||||||||||||||    
T  31979476 ttgctttgattatgcttgtgatgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttgaagacactttatctattgattaccacttcc 31979379  T
Q  200 tttgct 205  Q
    ||||||    
T  31979378 tttgct 31979373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5757514 - 5757561
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  5757514 attggagagctgctctctcccccagattaggtcatattggaccgaact 5757561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31076977 - 31077051
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttt 75  Q
    |||||||||||||| |||||   | ||||||||||||||||| ||||| |||||||| ||||||  |||||||||    
T  31076977 attggagagctgctatctcctagagagtaggtcatattggactaaactaggttaccaatcttggtatgtttgttt 31077051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11857035 - 11856996
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  11857035 attggagagctgctctctcccccatattaggccatattgg 11856996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14742460 - 14742499
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattgg 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  14742460 attggagagctgctctctcccccaaattaggtcatattgg 14742499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 21355949 - 21355898
Alignment:
Q  154 ttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    ||||| ||||||||||| |  ||||||| |||||||||||||||||||||||    
T  21355949 ttgttgttgttgcttgaagacactttacacattgattaccacttcctttgct 21355898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21356097 - 21356050
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||| ||| | |||||||||||||||| ||||    
T  21356097 attggagagctgctctctcctccagattaggtcatattggaccgaact 21356050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 31077151 - 31077190
Alignment:
Q  163 ttgcttgaggctactttactcattgattaccacttccttt 202  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  31077151 ttgcttgaggctactttactcattgattactatttccttt 31077190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27165744 - 27165702
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggacc 43  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||    
T  27165744 attggagggctactctgtcccccatagtaggtcatattggacc 27165702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5572277 - 5572350
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||| | | |||||||||||||||| || | ||| | || |||||| |||||||||    
T  5572277 attggagggctgctctctcccctagattaggtcatattggaccgaattgggtcaacaatcttggtgtgtttgtt 5572350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21801380 - 21801421
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggac 42  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  21801380 attggagagctgctcgctcccccagattaggtcatattggac 21801421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 33721743 - 33721792
Alignment:
Q  154 ttgttattgttgcttgaggctactttactcattgattaccacttcctttg 203  Q
    ||||| |||||||||||  ||||||||||||| |||||| ||||||||||    
T  33721743 ttgttgttgttgcttgaaactactttactcatcgattactacttcctttg 33721792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 1115287 - 1115331
Alignment:
Q  154 ttgttattgttgcttgaggctactttactcattgattaccacttc 198  Q
    ||||| ||||||||||| |||||||| |||||||||||| |||||    
T  1115287 ttgttgttgttgcttgaagctactttgctcattgattactacttc 1115331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 7294056 - 7294100
Alignment:
Q  5 gagagctgctctctcccccatagtaggtca-tattggaccaaact 48  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  7294056 gagagttgctctctcccccagagtaggtcagtattggaccaaact 7294100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 27165614 - 27165562
Alignment:
Q  154 ttgttattgttgcttgaggctacttta-ctcattgattaccacttcctttgct 205  Q
    ||||| |||||||||||| |||||||  |||||||||||| ||||||||||||    
T  27165614 ttgttgttgttgcttgagactacttttgctcattgattacgacttcctttgct 27165562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27986472 - 27986668
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgctctcttatctttagt 100  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| | || ||||   |||| | | |||||| || ||  |||||||||| |    
T  27986472 attggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcattctttcttgcttatcttta-t 27986570  T
Q  101 tgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcct 200  Q
    || |||| ||||| || |||||||||| ||||| ||||  |||  ||||||  ||||| ||||||||||| |  ||||||| ||| ||||||||||||||    
T  27986571 tgctttgtatatgcttgtggtgttgctctacac-taga-ctaggtctattt--ttgttgttgttgcttgaagacactttacacatagattaccacttcct 27986666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6794739 - 6794812
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||  ||| | || |||||| |||||||||    
T  6794739 attggagagctgctctctcccccatattaggtcatattggacctaaccgggtcaacaatcttggtgtgtttgtt 6794812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 21711280 - 21711211
Alignment:
Q  5 gagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  21711280 gagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 21711211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8370512 - 8370559
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  8370512 attggagagctgctctctcccccagattaggtcatattggaccgaact 8370559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16264411 - 16264364
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  16264411 attggagagctgctctctcccccagattaggtcatattggaccgaact 16264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25795842 - 25795795
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  25795842 attggagagctgctctctcccccagattaggtcatattggaccgaact 25795795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27974978 - 27975025
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  27974978 attggagagctgctctctcccccagattaggtcatattggaccgaact 27975025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32143382 - 32143335
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  32143382 attggagagctgctctctcccccagattaggtcatattggaccgaact 32143335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33386692 - 33386739
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  33386692 attggagagctgctctctcccccagattaggtcatattggaccgaact 33386739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38210572 - 38210619
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  38210572 attggagagctgctctctcccccatactaggtcagattggaccgaact 38210619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 40592808 - 40593010
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgttttcattattgc-tctcttatctttag 99  Q
    ||||||||||| ||||||||| || | |||||||||||||||| |||| ||| | || |||||| |||||||||    || || | |  ||||||| ||     
T  40592808 attggagagcttctctctcccacagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttccttttctttcattgcttatctata- 40592906  T
Q  100 ttgatttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcc 199  Q
    ||| ||||| |||| || |||||||||| ||||| |||||||||  || |||  ||||| ||||||||||  |  | ||||  |||||||||||||||||    
T  40592907 ttgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacattttatccattgattaccacttcc 40593004  T
Q  200 tttgct 205  Q
    ||||||    
T  40593005 tttgct 40593010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1417516 - 1417589
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| | |||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  1417516 attggagggatgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 1417589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1736331 - 1736404
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || | |||| |||||||||    
T  1736331 attggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatattggtgtgtttgtt 1736404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3716028 - 3716101
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||||||||||||||| || | | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  3716028 attggagagctgctctctctcctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 3716101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18552909 - 18552982
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| || ||||||    
T  18552909 attggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtatttgtt 18552982  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48438275 - 48438202
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||| ||| |  | |||||| |||||||||    
T  48438275 attggagggctgctctctcccccagattaggtcatattggaccgaactaggtcaataatcttggtgtgtttgtt 48438202  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 4387102 - 4387158
Alignment:
Q  149 ttttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||| ||||| |||||||||  |||||||||||||||||||||| |||| |||||||    
T  4387102 tttttttgttgttgttgcttatggctactttactcattgattactactttctttgct 4387158  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4386953 - 4386988
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcata 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4386953 attggagagctgctctctcccccagagtaggtcata 4386988  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 21156344 - 21156289
Alignment:
Q  150 tttgttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    |||||| || ||||||||| || |||||||||||||||||||| ||||| ||||||    
T  21156344 tttgttatttttgttgcttaagactactttactcattgattactacttcatttgct 21156289  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27453019 - 27452972
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||  | |||||||||||||||| ||||    
T  27453019 attggagagctgctctctcccccggattaggtcatattggaccgaact 27452972  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 29100081 - 29100030
Alignment:
Q  154 ttgttattgttgcttgaggctactttactcattgattaccacttcctttgct 205  Q
    ||||| |||||||||||| ||| | |||||||||||||| ||||||||||||    
T  29100081 ttgttgttgttgcttgagactattctactcattgattactacttcctttgct 29100030  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30709816 - 30709863
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    ||||||| |||||||||||||||| | |||||||||||||||| ||||    
T  30709816 attggagggctgctctctcccccagattaggtcatattggaccgaact 30709863  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 27038249 - 27038150
Alignment:
Q  104 tttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttg 203  Q
    ||||| |||| || |||||||||| ||||| ||||| |||| || ||||  |||| ||||||||||| |  ||||||| |||||||||||| ||| ||||    
T  27038249 tttgattatgcttgtggtgttgctctacacttagatctagatctgtttt--tgttgttgttgcttgaagacactttacacattgattaccatttcatttg 27038152  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 30709919 - 30710018
Alignment:
Q  104 tttgaatatgtttatggtgttgctttacacatagatttagaactattttgttgttattgttgcttgaggctactttactcattgattaccacttcctttg 203  Q
    ||||| |||| ||||||||||||| || || ||||| |||  || ||||  |||| ||||||||||  |  ||||||| |||||||||||||||||||||    
T  30709919 tttgattatgcttatggtgttgctctaaacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttg 30710016  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26299049 - 26298976
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||||||||||||| | || ||||||||| ||| |||| ||| | || |||||| |||||||||    
T  26299049 attggagggctgctctctcccccagattatgtcatattgaaccgaactgggtcaacaatcttggtgtgtttgtt 26298976  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36029154 - 36029113
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggac 42  Q
    |||||||||||||| ||||||||| | |||||||||||||||    
T  36029154 attggagagctgctttctcccccagattaggtcatattggac 36029113  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37466352 - 37466279
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| ||| |||||||||||| | |||||||||||||||| ||||  || | || |||||| |||||||||    
T  37466352 attggagggctactctctcccccagattaggtcatattggaccgaactgtgtcaacaatcttggtgtgtttgtt 37466279  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 11168306 - 11168354
Alignment:
Q  4 ggagagctgctctctcccccatagtaggtcatattggaccaaacttggt 52  Q
    |||| |||||||||||||||| | |||||||  ||||||||||||||||    
T  11168306 ggagggctgctctctcccccagactaggtcaatttggaccaaacttggt 11168354  T

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Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10790 - 10717
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||| ||| |  | |||||| |||||||||    
T  10790 attggagagctgctctctcccccaaattaggtcatattggaccgaactgggtcaataatcttggtgtgtttgtt 10717  T

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Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8455 - 8502
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||    
T  8455 attggagagctgctctctcccccagattaggtcatattggaccgaact 8502  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 133316 - 133363
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  133316 attggagagctgctctctcccccatattaggtcatattgaacctaact 133363  T

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Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 5736 - 5671
Alignment:
Q  9 gctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    |||||||||||||||| | |||||||||||||||| |||| ||| | || |||||| |||||||||    
T  5736 gctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgtt 5671  T

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Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2553 - 2480
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaacttggttaccagtcttggagtgtttgtt 74  Q
    ||||||| |||||| ||||||||| | |||||||||||||| | |||| ||| | || |||||| |||||||||    
T  2553 attggagggctgctgtctcccccagattaggtcatattggagcgaactgggtcaacaatcttggtgtgtttgtt 2480  T

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Target: scaffold0098 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45314 - 45267
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | |||||||||||| ||| ||||    
T  45314 attggagagctgctctctcccccagattaggtcatattgaaccgaact 45267  T

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Target: scaffold0087 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43997 - 44044
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggaccaaact 48  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||||    
T  43997 attggagagctgctctctcccccagaatagatcatattggaccgaact 44044  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 85744 - 85703
Alignment:
Q  1 attggagagctgctctctcccccatagtaggtcatattggac 42  Q
    |||||||||| ||||||||||||| | |||||||||||||||    
T  85744 attggagagccgctctctcccccagattaggtcatattggac 85703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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