View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_5 (Length: 691)
Name: NF15084_low_5
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 365 - 685
Target Start/End: Complemental strand, 45301604 - 45301283
Alignment:
| Q |
365 |
aattactttgaacattgcaactaaatgcttacaacttatgcagaaataatacttattaaaaaatgatataataatttgtattaagatcttaaatatacta |
464 |
Q |
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| T |
45301604 |
aattactttgaacattgcaactaaatgcttacaacttatgcagaaataatacttattaaaaaatgaaataataatttgtattaagatcttaaacatacta |
45301505 |
T |
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| Q |
465 |
acatgatatgtaacnnnnnnnnnnntacaaacatgataccaacaaagtataatctggttcttcgaggattggttccaacatgttcttggagtgtgacttt |
564 |
Q |
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| T |
45301504 |
acatgatatgtaacaaaaaaaaaa-tacaaacatgataccaacaaagtataatctggttcttcgaggattggttccaacatgttcttggagtgtgacttt |
45301406 |
T |
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| Q |
565 |
tacagcaatcgttggcatctaattcttggttggtggtgatttacactgctcaacctgacggtatcggt--tcacgcgcttcagtttggtggctcacatgt |
662 |
Q |
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| T |
45301405 |
tacagcaatcgttggcatctaattcttggttggtggtgatttacactgctcaacctgacggtatcggttctcacgcgcttcagtttggtggctcacatgt |
45301306 |
T |
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| Q |
663 |
cttcaggaaggaaattcgtggtt |
685 |
Q |
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| T |
45301305 |
cttaaggaaggaaatccgtggtt |
45301283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 45301961 - 45301715
Alignment:
| Q |
18 |
atatgcgactaagtatgaaatattatacaccctcttcatttctttttataagnnnnnnnn----------cctcccaaatcatctagaccaaataagagc |
107 |
Q |
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| T |
45301961 |
atatgcgactaaatatgaaatattatacaccctcttcatttctttttataagaaaaaaaaagaaaaaaaacctcccaaatcatctagaccaaataagagc |
45301862 |
T |
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| Q |
108 |
atttggtataattaaaat-attaaaatgaagtgatatagataccttagataagggatagcaaagcatgctaactcacaccgccactaacacgcctaacac |
206 |
Q |
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| T |
45301861 |
atttggtataattaaaattattaaaatgaagtgatatagataccttagataagggatagctaaacatgcta-ctcacaccgccactaacacgcctaacac |
45301763 |
T |
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| Q |
207 |
agtgtgaggcaacaagaggtgatgggttgaaaatctcactccaatcac |
254 |
Q |
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| T |
45301762 |
agtgtgaggcaactagaggtgatgggttgaaaatctcactccaatcac |
45301715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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