View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15084_low_6 (Length: 671)

Name: NF15084_low_6
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15084_low_6
NF15084_low_6
[»] chr4 (5 HSPs)
chr4 (120-542)||(11412827-11413249)
chr4 (596-652)||(11413327-11413383)
chr4 (17-72)||(11412455-11412510)
chr4 (78-124)||(19731598-19731644)
chr4 (78-118)||(1826151-1826191)
[»] chr7 (3 HSPs)
chr7 (71-124)||(17723120-17723173)
chr7 (78-125)||(29970458-29970505)
chr7 (399-482)||(15598402-15598488)
[»] chr3 (1 HSPs)
chr3 (398-465)||(34875102-34875169)
[»] chr1 (1 HSPs)
chr1 (396-537)||(20807390-20807538)
[»] chr8 (4 HSPs)
chr8 (78-118)||(8302294-8302334)
chr8 (78-124)||(20826785-20826831)
chr8 (78-124)||(41662977-41663023)
chr8 (25-72)||(35544708-35544758)
[»] chr6 (1 HSPs)
chr6 (78-124)||(17555783-17555829)
[»] chr5 (1 HSPs)
chr5 (78-124)||(25855048-25855094)
[»] chr2 (1 HSPs)
chr2 (489-538)||(15029102-15029151)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 120 - 542
Target Start/End: Original strand, 11412827 - 11413249
Alignment:
Q  120 gaaaaggataacaaatagaaaatagtatgaaatacctttctatctagcacaattttggtacgttctttcatcgattttgtggagcagaggtagttgacaa 219  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  11412827 gaaaaggataacaaaatgaaaatagtatgaaatatctttctatctagcacaattttggtatgttctttcatcgattttgtggagcagaggtagatgacaa 11412926  T
Q  220 aggctatgatgcttgaattgataataacgtgggtaatgcttgaaaactccataaaataaaatgacccatttttcgattttgctcctctgatacaaaaact 319  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  11412927 aggctatgatgcttgaattgataaaaacgtgggtaatgcttgaaaactccataaaacaaaatgacccatttttcgattttgttcctctgatacaaaaact 11413026  T
Q  320 actaactgtgacataatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttatcaagaatgttcgttaattaatgttat 419  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11413027 actaactctgacataatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatgttat 11413126  T
Q  420 tattacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttattgtgctcatcattgacccgtgtgaagc 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11413127 tattacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttattgtgcttatcattgacccgtgtgaagc 11413226  T
Q  520 acgggagcacgatctagtatgat 542  Q
    ||||||||||||| |||||||||    
T  11413227 acgggagcacgatttagtatgat 11413249  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 596 - 652
Target Start/End: Original strand, 11413327 - 11413383
Alignment:
Q  596 aatttggtgtgtattaagatacaatcccacctcttatattagactattacttttccc 652  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11413327 aatttggtgtgtattaagatacaatcctacctcttatattagactattacttttccc 11413383  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 11412455 - 11412510
Alignment:
Q  17 atgaacaaaattgaaaaagtgaaaagctattataccttcacacagatcttgcgatc 72  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11412455 atgaacagaattgaaaaagtgaaaagctattataccttcacacagatcttgcgatc 11412510  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 19731598 - 19731644
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 124  Q
    ||||| ||||| |||||||||||||||| |||||||||||| |||||    
T  19731598 aaatgctggcaggatatgcctggttataataattttgttcgtgaaaa 19731644  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 1826151 - 1826191
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcg 118  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  1826151 aaatgttggcaagatatgcctggttatgatgattttgttcg 1826191  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 17723173 - 17723120
Alignment:
Q  71 tcttttaaaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 124  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||| |||||    
T  17723173 tcttttgaaatgttggcaagatatgcctggttatagtgattttgttcgagaaaa 17723120  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 29970505 - 29970458
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaag 125  Q
    |||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  29970505 aaatgttggcaagatatgccaggttatactgattttgttcgtgaaaag 29970458  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 482
Target Start/End: Complemental strand, 15598488 - 15598402
Alignment:
Q  399 atgttcgttaattaatgttatt---attacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttattta 482  Q
    ||||||||||||||||||||||   ||||||||||| || || |||| |||| |||| |  |||||||||||| | ||||| |||||    
T  15598488 atgttcgttaattaatgttattattattacttatgtgatgtcgtaatgaagtctcaaatgcattatatttaacatgtttttaattta 15598402  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
Q  398 aatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattt 465  Q
    ||||||||||||||||||||||||||||| ||||||| |  |||| || |||||| ||||| ||||||    
T  34875102 aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt 34875169  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 537
Target Start/End: Original strand, 20807390 - 20807538
Alignment:
Q  396 agaatgttcgttaattaatgttattatta---cttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgct--- 489  Q
    |||||||||||||||||||||||||||||   || |||| || || ||||  ||||||||   ||||||||||||  |  |||| ||||| ||||||       
T  20807390 agaatgttcgttaattaatgttattattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaatttattatgctcat 20807489  T
Q  490 -tattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagt 537  Q
     ||||||||||||||||  |||||| |||||||||  |||| |||||||    
T  20807490 atattgtgctcatcattttcccgtgcgaagcacggttgcacaatctagt 20807538  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 8302334 - 8302294
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcg 118  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  8302334 aaatgttggcaagatatgcctggttataatgattttgttcg 8302294  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 20826831 - 20826785
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 124  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  20826831 aaatgttggcaagacatgcctggttataatgattttgttcgtgaaaa 20826785  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 41662977 - 41663023
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 124  Q
    |||||||||||||||||||||| ||||| | |||||||||| |||||    
T  41662977 aaatgttggcaagatatgcctgattataatgattttgttcgtgaaaa 41663023  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 35544758 - 35544708
Alignment:
Q  25 aattgaaaaagtgaaaagctattat---accttcacacagatcttgcgatc 72  Q
    |||||||||||| ||||||||||||   ||||| |||||||||||||||||    
T  35544758 aattgaaaaagttaaaagctattattatacctttacacagatcttgcgatc 35544708  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 17555783 - 17555829
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 124  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  17555783 aaatgttggcaagacatgcctggttataatgattttgttcgtgaaaa 17555829  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 25855048 - 25855094
Alignment:
Q  78 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 124  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  25855048 aaatgttggcaagacatgcctggttataatgattttgttcgtgaaaa 25855094  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 538
Target Start/End: Complemental strand, 15029151 - 15029102
Alignment:
Q  489 ttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagta 538  Q
    |||||||| ||| |||||||||||| ||||||||||||  ||||||||||    
T  15029151 ttattgtgttcaccattgacccgtgcgaagcacgggagtgcgatctagta 15029102  T

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