View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_8 (Length: 622)
Name: NF15084_low_8
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 240 - 605
Target Start/End: Original strand, 38823537 - 38823901
Alignment:
| Q |
240 |
aaacacaacaacataagaaaatacaccgattcaaaccttttatagtcagaacttgaactctacacttgtgctttgctaagtctaaagtattctcggtgta |
339 |
Q |
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| T |
38823537 |
aaacacaacaacataagaaaatacaccgattcaaaccttttatagtcagaacttgaactctacacttgtgctttgctaagtctaaagtattctcggtgta |
38823636 |
T |
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| Q |
340 |
cttaaaatagctaaaagattgtgataatgtgtaacacagctatagcttaattttgaattccttgttagtgatgccacacatcatgatttaaagcaatgga |
439 |
Q |
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| T |
38823637 |
cttaaaatagctaaaagattgtgataatgtgtaacacagctatagcttaattttgaattccttgttagtgatgccacacatcatgatttaaagcagtgga |
38823736 |
T |
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| Q |
440 |
ttgacaggttgaaacatttgatactctatttggatctatcagtagtgttagaaatacattgactctaagagatctcccaagtcatccggtaacagaagaa |
539 |
Q |
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| T |
38823737 |
ttgacaggttgaaacatttgataatctatttggatctatcagtag-acaagaaatacattgactctaagagatctcccaagtcatccggtaacagaagaa |
38823835 |
T |
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| Q |
540 |
ctgaatcatataaaatcaacctaactcgatcaagtacaatccttttggaagcacctaacaaatatc |
605 |
Q |
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| T |
38823836 |
ctgaatcatataaaatcaacctaacttgatcaagtacattccttttggaagcacctaacaaatatc |
38823901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 38823371 - 38823541
Alignment:
| Q |
16 |
atgtgaagaaaacctacaagttcaagttgattgagacataaggcaaaacaactcacaattcagaaatacattatacaatacacaaaatcactaaaacact |
115 |
Q |
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| T |
38823371 |
atgtgaagaaaacctacaagttcaagttgattgagacataaggcaaaacaactcacaattcagaaatacattatacaatacacaaaatcactaaaacact |
38823470 |
T |
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| Q |
116 |
aaacaaaggacagagtgtaatttatgacagactgaacaaaaagcttgtactcgagatgttgagtgcaaaca |
186 |
Q |
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| T |
38823471 |
aaacaaaggacagagtgtaatttatgacagactgaacaaaaagcttgtactcgagatgttgagtgcaaaca |
38823541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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