View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15084_low_9 (Length: 614)
Name: NF15084_low_9
Description: NF15084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15084_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 4 - 601
Target Start/End: Original strand, 5414541 - 5415142
Alignment:
| Q |
4 |
atcacagaagcatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattatcaaattcatgatataaggggggttaa--- |
100 |
Q |
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| T |
5414541 |
atcacagaagtatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattgtcaaattcatgatataaggggggttaatta |
5414640 |
T |
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| Q |
101 |
-ctatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtt |
199 |
Q |
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| T |
5414641 |
actatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtt |
5414740 |
T |
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| Q |
200 |
tttctcatcaattgtttgtcaatagcagagccacattcatttcttgcgccatttttcagcttcatataaaaaatatatgtagtatatatttatttttgtc |
299 |
Q |
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| T |
5414741 |
tttctcatcaattgtttgtcaatagcagagccacattcatttcttgcgccatttttcagcttcatataaaaaatatatgtagtatatatttatttttgtc |
5414840 |
T |
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| Q |
300 |
aaccatgactgataattcagaaagcaacgaaattcatcatgaggtagttttagatgtaaatagtgatgcctcacaaaattgtgaagaatcaggcatcaaa |
399 |
Q |
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| T |
5414841 |
aaccatgactgataattcagaaagcaacgaaattcatcatgaggtagttttagatgtaaatagtcatgcctcacaaaattgtgaagaatcaggcatcaaa |
5414940 |
T |
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| Q |
400 |
gactctgtgccccttctcaagaaggtaacttttatttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttat |
499 |
Q |
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| T |
5414941 |
gactctgtgccccttctcaagaaggtaacttttatttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttat |
5415040 |
T |
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| Q |
500 |
atagagcttgaaaatttgatttgaaatgacnnnnnnntttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgata |
599 |
Q |
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| T |
5415041 |
atagagcttgaaaatttgatttgaaatgacaaaaaaatttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgata |
5415140 |
T |
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| Q |
600 |
tt |
601 |
Q |
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|| |
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| T |
5415141 |
tt |
5415142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 5388167 - 5388228
Alignment:
| Q |
353 |
atgtaaatagtgatgcctcacaaaattgtgaagaatcaggcatcaaagactctgtgcccctt |
414 |
Q |
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| T |
5388167 |
atgtaaatggtgatgcctcccaaaattgtgatgagtcatgcatccaagactatgtgcccctt |
5388228 |
T |
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